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Report for CCDS52425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52425.1 Public Mus musculus 7 Stk32c 23 108 98 CCDS HistoryNCBI Gene:57740Re-query CCDS DB by CCDS ID:52425.1Re-query CCDS DB by GeneID:57740See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52425.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165870.1 ENSMUSP00000126638.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165870.1Link to Ensembl Protein Viewer:ENSMUSP00000126638.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165870Re-query CCDS DB by Protein ID:ENSMUSP00000126638
Original member Current member NCBI NM_001162540.1 NP_001156012.1 Accepted alive Link to Nucleotide Sequence:NM_001162540.1Link to Protein Sequence:NP_001156012.1Re-query CCDS DB by Nucleotide ID:NM_001162540Re-query CCDS DB by Protein ID:NP_001156012Link to BLAST:NP_001156012.1

Chromosomal Locations for CCDS 52425.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 139104223 139104367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139105265 139105332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139119017 139119148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139119241 139119366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139120670 139120786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139121356 139121459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139121761 139121850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139121937 139121974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139122829 139123002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139125128 139125246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGTACGCCATGAAGTACATGAACAAGCAGCAATGCATAGAGCGGGATGAGGTCCGGAATGTCTTCCGGG
AGCTGGAGATCCTACAGGAAATCGAGCATGTCTTCCTGGTGAACCTCTGGTACTCCTTCCAGGATGAGGA
GGACATGTTCATGGTGGTGGATCTGCTTCTGGGGGGAGACCTGCGCTACCACCTACAGCAGAATGTCCAG
TTCTCAGAGGACACAGTGAGGCTGTACATCTGTGAGATGGCCCTGGCCCTGGACTACCTGCGTAGCCAAC
ACATCATCCACAGAGATGTCAAGCCTGACAACATCCTCCTGGATGAACAAGGACATGCACACCTTACTGA
CTTCAACATTGCCACCATCATAAAGGATGGGGAGAGGGCGACAGCTTTAGCTGGGACCAAACCGTACATG
GCTCCAGAGATCTTCCACTCTTTCGTCAATGGCGGGACTGGCTACTCCTTCGAGGTGGACTGGTGGTCGG
TGGGGGTGATGGCTTACGAGCTGCTACGAGGATGGAGACCCTACGATATCCACTCGAGCAATGCTGTGGA
GTCGCTGGTTCAGCTGTTCAGCACTGTGAGTGTCCAGTACGTGCCCACCTGGTCCAAGGAGATGGTAGCC
CTGCTGCGAAAGCTCCTCACCGTGAACCCTGAGCACCGGTTCTCCAGTCTCCAAGACATGCAGACAGCCC
CATCGCTGGCCCACGTGCTGTGGGACGACCTGAGTGAAAAGAAGGTGGAGCCAGGCTTTGTGCCCAATAA
AGGCCGCCTGCACTGTGATCCCACCTTTGAGCTGGAGGAGATGATCCTTGAGTCGAGGCCTCTGCACAAG
AAGAAAAAGCGGCTGGCCAAGAATAAGTCTCGGGACAGCAGCAGAGACAGTTCCCAGTCGGAGAATGACT
ACCTGCAAGACTGCCTGGATGCCATCCAGCAAGACTTCGTGATTTTTAACAGAGAAAAGTTGAAGAGGAG
CCAGGAACTCATGAGCGAGCCTCCTCCAGGCCCAGAGACGTCAGATATGACAGATTCCACCGCAGACAGT
GAGGCAGAGCCCACAGCCCTGCCCATGTGTGGCTCCATCTGCCCCTCATCTGGGAGCAGCTAG

Translation (370 aa):
MYAMKYMNKQQCIERDEVRNVFRELEILQEIEHVFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVQ
FSEDTVRLYICEMALALDYLRSQHIIHRDVKPDNILLDEQGHAHLTDFNIATIIKDGERATALAGTKPYM
APEIFHSFVNGGTGYSFEVDWWSVGVMAYELLRGWRPYDIHSSNAVESLVQLFSTVSVQYVPTWSKEMVA
LLRKLLTVNPEHRFSSLQDMQTAPSLAHVLWDDLSEKKVEPGFVPNKGRLHCDPTFELEEMILESRPLHK
KKKRLAKNKSRDSSRDSSQSENDYLQDCLDAIQQDFVIFNREKLKRSQELMSEPPPGPETSDMTDSTADS
EAEPTALPMCGSICPSSGSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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