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Report for CCDS52415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52415.1 Public Mus musculus 7 Nsmce4a 23 108 98 CCDS HistoryNCBI Gene:67872Re-query CCDS DB by CCDS ID:52415.1Re-query CCDS DB by GeneID:67872See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52415.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160289.8 ENSMUSP00000125300.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160289.8Link to Ensembl Protein Viewer:ENSMUSP00000125300.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160289Re-query CCDS DB by Protein ID:ENSMUSP00000125300
Original member Current member NCBI NM_001162855.1 NP_001156327.1 Accepted alive Link to Nucleotide Sequence:NM_001162855.1Link to Protein Sequence:NP_001156327.1Re-query CCDS DB by Nucleotide ID:NM_001162855Re-query CCDS DB by Protein ID:NP_001156327Link to BLAST:NP_001156327.1

Chromosomal Locations for CCDS 52415.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 130533592 130533666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130533770 130533861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130535524 130535572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130536983 130537077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130538162 130538252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130539011 130539110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130539814 130539965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130542680 130542810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130545895 130545972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130546992 130547274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGTCTGGCGACAGCAGCGGCCGCCGGTCTGAGGGCCGGGGCCGGGGCCGCGACCCGCACCGGGATCGCA
CCCGCTCCCGGTCCCGCTCGCGGTCCCCGCTGGCCCGCCGCGGCGCCGCGCCGGAGCGCAGGGAGGCAGC
GGAGCGTCCGAGCTTGGAGGACTCCGATCTGTCTGATTCTGGGGACGAGCTGATGGACCCGGCCTGCTTG
GAGGCCGAGTACGACCAGGGCCTGTGCCGCCAGATCCGCCATCAGTACCGCGCTCTCATCAACTCTGTCC
AACAAAACCGGGAAGACATACTGAATGCTGGTGACAAACTAACAGAGGTCCTGGAAGAAGCTAACACTCT
GTTTAATGAAGTGTCACGAGCAAGAGAGGCAGTTCTGGATGCCCAGTTTCTTGTTCTGGCTTCAGACTTG
GGCAAAGAGAAAGCCAAACAGCTGCGCTCTGACCTGAGCTCGTTTGATATGTTAAGATATGTTGAAACTC
TACTGACACATATGGGTGTAAACCCACTAGAAGCTCAAGAGGTCATCCGTGATGAAGACAGAGCTGATAT
TGAGTTAATTGTCTATGACTCCTGGAAAATATCAGGCAAAACAGCAGAAAACACCTTTAATAAGACCCAT
ACATTCCACTTTCTGTTGGGTTCAATACATGGAGAATTCCCTGTGCCAAAGCCACGAAGTGATCGGCCAA
GACAGCCTCGCATGATAGAAGAGCAGCGTGCAATGCCTGCTCAGTTGAAATGCATGGAAGAATCTCACCA
AGAAGCAACGGAGAAGGAAGTGGAGAGGATCTTGGGATTGTTGCAGACATACTTTCGAGAAGACCCTGAT
ACTCCAATGTCATTTTTTGATTTTGTGGTTGATCCACATTCTTTCCCCCGTACAGTGGAAAACATCTTTC
ATGTTTCCTTCATCATACGGGATGGTTTTGCAAGAATAAGACTTGACCAAGACCGACTGCCAATAATAGA
GCCAGTGATTAATGAAGAAAGTGAGGGAATTGACCACAACATTCAAATTAGGAGTCAAGGAATTATAGCT
CTGAGTTACCATGACTGGGAGGAGATTGTGAAGACCTTTGAGATTTCGGAGCCTGTGATCCCGCTGAGTC
AGAGCCAGCAGCGGCTCAGTGCCTGA

Translation (381 aa):
MSGDSSGRRSEGRGRGRDPHRDRTRSRSRSRSPLARRGAAPERREAAERPSLEDSDLSDSGDELMDPACL
EAEYDQGLCRQIRHQYRALINSVQQNREDILNAGDKLTEVLEEANTLFNEVSRAREAVLDAQFLVLASDL
GKEKAKQLRSDLSSFDMLRYVETLLTHMGVNPLEAQEVIRDEDRADIELIVYDSWKISGKTAENTFNKTH
TFHFLLGSIHGEFPVPKPRSDRPRQPRMIEEQRAMPAQLKCMEESHQEATEKEVERILGLLQTYFREDPD
TPMSFFDFVVDPHSFPRTVENIFHVSFIIRDGFARIRLDQDRLPIIEPVINEESEGIDHNIQIRSQGIIA
LSYHDWEEIVKTFEISEPVIPLSQSQQRLSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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