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Report for CCDS52360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52360.1 Public Mus musculus 7 Trim66 23 108 98 CCDS HistoryNCBI Gene:330627Re-query CCDS DB by CCDS ID:52360.1Re-query CCDS DB by GeneID:330627See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106741.9 ENSMUSP00000102352.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106741.9Link to Ensembl Protein Viewer:ENSMUSP00000102352.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106741Re-query CCDS DB by Protein ID:ENSMUSP00000102352
Original member Current member NCBI NM_001170912.1 NP_001164383.1 Accepted alive Link to Nucleotide Sequence:NM_001170912.1Link to Protein Sequence:NP_001164383.1Re-query CCDS DB by Nucleotide ID:NM_001170912Re-query CCDS DB by Protein ID:NP_001164383Link to BLAST:NP_001164383.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164383.1 1344 Q924W6-1 1344 100% 0 0

Chromosomal Locations for CCDS 52360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 109453975 109454034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109455027 109455245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109455632 109455784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109456062 109456136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109457046 109457172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109457548 109457834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109458111 109458285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109458741 109458801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109460158 109460350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109460493 109461014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109472234 109472395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109475052 109475959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109477638 109477755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109480926 109481072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109481883 109481997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109483032 109483148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109483638 109483770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109484578 109484725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109486047 109486150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109507741 109507951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4035 nt):
ATGAGCCCAGGCCTGCCTGTGAGCATTCCAAGTCAGCCACACTGCTCTACAGATGAACGCGTGGAGGCTC
TGGCACCGACCTGCTCTATGTGTGGACGGGACCTACAAGCTGAGGGCTCCCGGCTTTTACCGTGCCAACA
TCTGCTCTGTAAGGATTGCTACCAGGGCTTCATGCAGGAGCTAGGGCATGCTACCAGGGCTTACCCAGGT
AAGCTCATCTCCTGTCCTGGATGTCAGCGTGTCTATCTTACCAGAGATGTAACTGAACATATTTTCCTTC
AGTGCTTTTCTCCTGTGAAACCCACTATGGCCAGGAACTGCTCTGAGTGCAAGGAGAAGCGGGCAGCACA
CATCCTCTGCACATACTGCAACCGCTGGCTGTGCAGCTCCTGCACAGAGGAGCACCGGCATGTCCCAGCC
CCGGGGGGCCCACTCTTTGCACGGGCACAGAAGGGATCCTCAGGGGTGAATGGTGGCTCTGGGGACTTTG
CCTTGTACTGCCCTCTGCACACACAGGAAGTGCTCAAGCTTTTCTGCGAGACGTGCGATGTACTCACCTG
CCACAGCTGCCTGATGGTGGAGCACAAAGAGCACAGATGCAGGCACGTGGAAGAAGTTCTACAAAACCAG
AGGATGCTCCTGGAGAGTGTGACTTCCCAGGTGGCACATAAGAAATCCAGCCTACAGACATCTGCAAAGC
AAATCGAGGACAGAATTTTTGAAGTGAAGCATCAGCACCGGAAGGTGGAGAACCAGATTAAAATGGCCAA
GATGGTCCTCATGAACGAGTTGAACAAGCAAGCCAACGGGCTCATAGAGGAGCTTGAGGGCATCACTAAT
GAGAGAAAGCGAAAGCTGGAGCAGCAGCTGCAGAGCATCATGGTTCTCAACCGGCAGTTTGAACATGTGC
AGAATTTCATCAACTGGGCTGTCTGCAGCAAAAGCAGCGTCCCTTTCCTTTTCAGCAAAGAGCTGATTGT
GTTTCAGATGCAGCGGTTGCTGGAGACGAGATGTAACACAGATCCTGGCTCTCCTTGGAGTATCAGATTC
ACCTGGGAGCCCAACTTCTGGACCAAGCAGCTGGCTTCCCTTGGCTGCATAACCACTGAAGGTGGACAGC
TGACCCGGGCAGATGCTGCAGCTGCCTCTTATGGGAGTTTACAGGGGCAGCCATCTTTTTATCAGAGCCA
CCAGGCCCCCATGGCTCAGCAGGAGGCACTCAGCCACCCCTCACACAAGTTCCAGTCTCCAGCACTGTGT
TCCTCGTCTGTCTGCTGCTCCCACTGCTCTCCAGTCTCGCCTTCCCTCAAAGGTCAAGTCCCTCCACCCA
GCATCCACCCGGCTCACAGTTTCCGACAGCCTTCTGAAATGGTGCCCCACCAGCTGGGGTCACTGCAGTG
TTCTACCCTGCTGCCCAGGGAGAAAGAGCTGGCCTGCAGTCCTCATCCACCCAAACTGATGCAGCCCTGG
TTGGAACCACAACCTCCTGCAGAACAGGAGAGTACATCCCAGCGGCCAGGACCGCAACTGGTTTCCCAGC
CTGTGTGCATCGTCCCTCCGCAAGATGTGCAGCCAGGAGCCCATGCCCAGCCCACCATACAGACACCCTC
CATCCAAGTTCAGCTGGGCCACCATCAGAAGCTAAAGCTCAGCCACTTTCAGCAGCAGCCGCAGCAGCAG
CCACCCCCACCACCGCCACCTCCCCCACCCCCCCAGCATGCACCTCCACCCTTGCCTCCATCCCAGCACC
TGGCTTCCAGTCAGCACGAGAGCCCTCCTGGGCCTGCCTGTTCGCAGAATGTGGACATTATGCACCACAA
GTTTGAGCTGGAGGAGATGCAGAAGGACTTGGAGCTTCTCCTGCAGGCCCAGCAGCCTAGCCTGCAGTTG
AGTCAGACCAAGTCTCCTCAGCATCTTCAGCAAACCATCGTGGGGCAGATCAACTACATCGTGAGGCAGC
CAGCACCCGTGCAGTCCCAGAGCCAGGAGGAGACCCTGCAGGTTACAGAGGAGCCACCAGCACCTGAGGG
CCCAAAGCCAGCTCTACCTGTTGACAAGAACACTGCTGCTCCCTTGCCCCAGACATCTGGGGAGGAAACG
CCTCACAGTGTCCCTCCAGTGGATGGCACCTCCCAGCACTCTTCTCCAAATGTGGTGAGAAAGCACGCCA
CCTCAGTGAGCATCATGGGCTTTTCCAACACTGTGGAGATGGAGTTGTCATCTACCAGGCTGGCGAGGAC
CATAGAGCCACAGATACACAGGGTGAGCAGCCTGACAGCTGCCCCCACCCACACAATTCCGAGCTTGCTG
AGTGGCCCACCACAAACTGTGTCCAGCCTGATGAGTGTTTCAAACCATGCCATGCCAAGCCTGACAGCCA
GTCACCTGCAGCCCGTGCCAAACCTTGTGCGTGGCACATTCCAGTCCACGTCGAACCTGAGGGGTGATTC
CTCTCAAGCCATCACAGGCCTGGCAAGTAATCACTCACAAGCTGGGCCCAGCCTAATGTCTGGGCACACC
CAGGCTGCGCCGAGTCTGGCCACTTGTCCTCTGCAGGGAATGCCACCGGTTTCTGATGTGCATGTGGAGC
CGAGATCCGTATCCAGTCCTGGGTCTGGCCCAGCTGCAGAAAGCCTGGGTACCAGGGATGGGGCTGAGTC
CTCCCTGGGGAATGCCTTGTGTAAGATGGAAAGTGAGGATTGTACCCGTTTCTCAGACTCAGTAGGACAA
GGCCCTACAGCCTCCAGTCTGGATGGTCCCAAGGATTTGGCTATTCCCTCAGAACTGGAGGAACCAATTA
ACCTCTCTGTGAAAAAACCTTTCCTGGCACCAGTGATCAACACATCCACTGCTCTGCAACAGTACCGGAA
TCCAAAAGAATATGAGAATTTTGAACAAGGAGCCCTAGAGCTGGATACAAAGGAGAATTCAGACATCAGA
GCTATCAGTAGTGAGCCCAAGATCCCCTACGTGCGACTGGAGCGGCTCAAGATCTGTGCTGCCTCATCAG
GAGAGATGCCTGTGTTTAAGCTGAAGCCCCAGAAAAATAGCCAGGACGGAAACTTCCTCCTGGTGATTGA
GTGTGGCACTGAGTCCTCCAGCATGTCCATTAAGGTCAGCCAGAACAGCCTGCCTGATGCCAGCCAGGGC
CCAGGTCTTGGGGGAAGAAAGGTCACTGTCACATCTCTGACTGGGCAGCAGCCACAAGAGGTGGAGAGCA
CATCTGAGGAACACAGACTCATCCCCCGAGCTCCAGGAGCCAAGAAGAACACCCCGGCCCCCATAGAGAA
TGAGGACTTCTGTGCGGTGTGCATCAACGGTGGGGAGCTGCTATGCTGTGACCGCTGCCCCAAAGTGTAT
CACCTTTCCTGCCACGTGCCAGCCTTGCTCAGCTTCCCAGGGGGAGAATGGGTGTGCACCCTGTGCCGCA
GCCTGACGCAGCCTGAGATGGAGTACGACTGTGAGAACGCGCGCTACGGTCACCCTGGAGTGCGGGTACT
TCCCGGCCTGAGCATGTATGACCAGAAGAAGTGTGAGAAGCTGGTCCTGTCCCTGTGCTGCAACAGCCTC
AGCCTGCCCTTCCATGAACCAGTCAGCCCTCTGGCCAGGCATTATTACCAGATTATCAAGAGGCCCATGG
ACCTGTCAATCATCCGGAGGAAACTGCAAAAGAAGGACCCAGCTCATTACACTACTCCAGAGGAAGTGGT
GTCAGATGTACGCCTCATGTTCTGGAACTGTGCTAAGTTCAATTATCCTGACTCGGAGGTTGCAGAGGCT
GGCCGCTGTCTGGAAGTGTTCTTTGAAGGCTGGCTAAAGGAGATCTACCCAGACAAATGCTTTGCCCAGC
CCCAGCAAGAGGATTCAGACTCTGAGGACGTATCTGGCGAGAGTGGCTGTTCCACTCCTCAGGGCTTCCC
ATGGCCTCCCTACATGCAGGAAGGCATCCAGCCCAAGAGGCGACGGCGGCATATGGAGAATGAGAAGACA
AAGAGAGTGTCGTTTCGTCTGGCCAACAGCATCTCGCAGGTGTGA

Translation (1344 aa):
MSPGLPVSIPSQPHCSTDERVEALAPTCSMCGRDLQAEGSRLLPCQHLLCKDCYQGFMQELGHATRAYPG
KLISCPGCQRVYLTRDVTEHIFLQCFSPVKPTMARNCSECKEKRAAHILCTYCNRWLCSSCTEEHRHVPA
PGGPLFARAQKGSSGVNGGSGDFALYCPLHTQEVLKLFCETCDVLTCHSCLMVEHKEHRCRHVEEVLQNQ
RMLLESVTSQVAHKKSSLQTSAKQIEDRIFEVKHQHRKVENQIKMAKMVLMNELNKQANGLIEELEGITN
ERKRKLEQQLQSIMVLNRQFEHVQNFINWAVCSKSSVPFLFSKELIVFQMQRLLETRCNTDPGSPWSIRF
TWEPNFWTKQLASLGCITTEGGQLTRADAAAASYGSLQGQPSFYQSHQAPMAQQEALSHPSHKFQSPALC
SSSVCCSHCSPVSPSLKGQVPPPSIHPAHSFRQPSEMVPHQLGSLQCSTLLPREKELACSPHPPKLMQPW
LEPQPPAEQESTSQRPGPQLVSQPVCIVPPQDVQPGAHAQPTIQTPSIQVQLGHHQKLKLSHFQQQPQQQ
PPPPPPPPPPPQHAPPPLPPSQHLASSQHESPPGPACSQNVDIMHHKFELEEMQKDLELLLQAQQPSLQL
SQTKSPQHLQQTIVGQINYIVRQPAPVQSQSQEETLQVTEEPPAPEGPKPALPVDKNTAAPLPQTSGEET
PHSVPPVDGTSQHSSPNVVRKHATSVSIMGFSNTVEMELSSTRLARTIEPQIHRVSSLTAAPTHTIPSLL
SGPPQTVSSLMSVSNHAMPSLTASHLQPVPNLVRGTFQSTSNLRGDSSQAITGLASNHSQAGPSLMSGHT
QAAPSLATCPLQGMPPVSDVHVEPRSVSSPGSGPAAESLGTRDGAESSLGNALCKMESEDCTRFSDSVGQ
GPTASSLDGPKDLAIPSELEEPINLSVKKPFLAPVINTSTALQQYRNPKEYENFEQGALELDTKENSDIR
AISSEPKIPYVRLERLKICAASSGEMPVFKLKPQKNSQDGNFLLVIECGTESSSMSIKVSQNSLPDASQG
PGLGGRKVTVTSLTGQQPQEVESTSEEHRLIPRAPGAKKNTPAPIENEDFCAVCINGGELLCCDRCPKVY
HLSCHVPALLSFPGGEWVCTLCRSLTQPEMEYDCENARYGHPGVRVLPGLSMYDQKKCEKLVLSLCCNSL
SLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKDPAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEA
GRCLEVFFEGWLKEIYPDKCFAQPQQEDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKT
KRVSFRLANSISQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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