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Report for CCDS52309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52309.1 Public Mus musculus 7 Ccdc90b 23 108 98 CCDS HistoryNCBI Gene:66365Re-query CCDS DB by CCDS ID:52309.1Re-query CCDS DB by GeneID:66365See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52309.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085017.4 ENSMUSP00000082090.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085017.4Link to Ensembl Protein Viewer:ENSMUSP00000082090.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000085017Re-query CCDS DB by Protein ID:ENSMUSP00000082090
Original member Current member NCBI NM_001162918.1 NP_001156390.1 Accepted alive Link to Nucleotide Sequence:NM_001162918.1Link to Protein Sequence:NP_001156390.1Re-query CCDS DB by Nucleotide ID:NM_001162918Re-query CCDS DB by Protein ID:NP_001156390Link to BLAST:NP_001156390.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156390.1 222 Q8C3X2-2 222 100% 0 0

Chromosomal Locations for CCDS 52309.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 92561536 92561635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92567622 92567741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92568472 92568575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92574622 92574663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92574744 92574815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92575329 92575382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92578424 92578538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92581795 92581856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGAGGAGCCGCTGGATTTGGCGGTTCCTGCGCCCTGACGGCGGCGGAATCCGCTGGACTTCAACTCCTC
ATGGGCGTCTGTCACCCGCCCTGCGGAGAGGGTTCTTGACCACCACAACTAAGTCAGATTATGATAGAAG
ACCAGTGGATATAACTCCTCTAGAACAAAGAAAATTAACTTTTGATACCCATGCGTTGGTGCAGGACTTG
GAAACTCACGGATTTGACAAAACACAAGCACAGACAATTGTATCAGTGCTAAGTACGCTATCAAACGTCA
GCCTGGATACTATCTACAAGGAGATGGTGACTAAAGCTCAGCAGAAAATGAAAATTGAACTAGATCAAGT
TAAGCAGCAGCTGACTAATGAAACCAGTCGAATCAGAGCGGACAATAAGCTGGACATTAACCTGGAAAGG
AGCAGAGTGACAGACATGTTCACAGATCAAGAAAAGCAACTTATAGAAGCAACCAATGAATTTGCCAAAA
AGGATACACAAACCAAAAGTATTATTTCAGAGACCAGTAATAAAATTGACACTGAAATCGCTTCCTTAAA
AACACTGATGGAGTCGAGCAAACTTGAAACAATTCGTTATCTTGCAGCCTCAGTGTTCACTTGCTTGGCG
ATAGCATTGGGGTTTTATAGGTTCTGGAAGGAGAACTGA

Translation (222 aa):
MRSRWIWRFLRPDGGGIRWTSTPHGRLSPALRRGFLTTTTKSDYDRRPVDITPLEQRKLTFDTHALVQDL
ETHGFDKTQAQTIVSVLSTLSNVSLDTIYKEMVTKAQQKMKIELDQVKQQLTNETSRIRADNKLDINLER
SRVTDMFTDQEKQLIEATNEFAKKDTQTKSIISETSNKIDTEIASLKTLMESSKLETIRYLAASVFTCLA
IALGFYRFWKEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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