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Report for CCDS52277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52277.1 Public Mus musculus 7 Aen 23 108 98 CCDS HistoryNCBI Gene:68048Re-query CCDS DB by CCDS ID:52277.1Re-query CCDS DB by GeneID:68048See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52277.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107421.7 ENSMUSP00000103044.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107421.7Link to Ensembl Protein Viewer:ENSMUSP00000103044.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107421Re-query CCDS DB by Protein ID:ENSMUSP00000103044
Original member Current member NCBI NM_001162939.2 NP_001156411.1 Accepted alive Link to Nucleotide Sequence:NM_001162939.2Link to Protein Sequence:NP_001156411.1Re-query CCDS DB by Nucleotide ID:NM_001162939Re-query CCDS DB by Protein ID:NP_001156411Link to BLAST:NP_001156411.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156411.1 298 Q9CZI9-2 298 100% 0 0

Chromosomal Locations for CCDS 52277.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 78902408 78902830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78905843 78906043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78907144 78907416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGCCCGCAAGGCCTTGCTTCAGGAGCAGGAGCTGTTGAGCACGGCACCAGGGCCAGGTCTCTGCCTTC
TGCCTTCACCATCACAGATGCCAGCGGTCACAGAGGCTTCGGACAGCAGGAGGCAACGTCCCAAGGCCAG
GTCCGGCAGCAATGGCCTGTGCAGCAAAAAGTCTGTCCCCAGAGAAGCTCCAAGACCTGGGCCCATCAAG
TGTGTGGCCATTGACTGTGAGATGGTGGGTACGGGCCCCCAAGGACGGGTGAGCGAGCTAGCCCGCTGCT
CTGTGGTGAGCTACAGTGGTGACGTTCTCTATGACAAATACATCCGGCCTGAAATGCCCATTGTGGACTA
TCGCACCCGCTGGAGTGGCATCACCCGCCAGCACATGCACAAGGCTATCCCCTTTCAGGTGGCCCAGAAG
GAGATCCTTAAGCTGTTGAAGGGCAAGGTGGTGGTGGGGCACGCACTGCACAATGACTTCCAGGCCCTGA
AGTACGTCCACCCTCGGAGCCAGACCCGGGATACCACTTATGTCCCAAACCTGCTCAGCCAGCCCAGCTC
CCTTATCCGAACTCGGGTCTCTCTTAAGGACCTGGCCTTGAACCTGCTGCACAAGAAGATCCAGGTCGGT
CACCAGGGCCACTCATCTGTGGAAGATGCCATGACAGCCATGGAGTTGTACCAGCTGGTGGAGGTGCAGT
GGGAGCAGCAAGTGGCCAGCTCTGCCCAGGCCCCTGCTGAGGACAGGGGGCCCGACAGCAGCACTGACGT
GGAGCAGTACATGGACGACCAGTACTGGCCCGAGGACCTGACCCAGAGCACCGGGGCCGAGACAAATGGA
GGCCCAGATAGACAGGAGGGAGAGGAAGGGCAGGGAGCCAGGAGTGCTCCTCCCTAG

Translation (298 aa):
MARKALLQEQELLSTAPGPGLCLLPSPSQMPAVTEASDSRRQRPKARSGSNGLCSKKSVPREAPRPGPIK
CVAIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMHKAIPFQVAQK
EILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNLLSQPSSLIRTRVSLKDLALNLLHKKIQVG
HQGHSSVEDAMTAMELYQLVEVQWEQQVASSAQAPAEDRGPDSSTDVEQYMDDQYWPEDLTQSTGAETNG
GPDRQEGEEGQGARSAPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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