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Report for CCDS52231.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52231.2 Public Mus musculus 7 Emc10 23 108 98 CCDS HistoryNCBI Gene:69683Re-query CCDS DB by CCDS ID:52231.2Re-query CCDS DB by GeneID:69683See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 52231.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118808.8 ENSMUSP00000113509.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118808.8Link to Ensembl Protein Viewer:ENSMUSP00000113509.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000118808Re-query CCDS DB by Protein ID:ENSMUSP00000113509
Original member Current member NCBI NM_197991.3 NP_932108.3 Accepted alive Link to Nucleotide Sequence:NM_197991.3Link to Protein Sequence:NP_932108.3Re-query CCDS DB by Nucleotide ID:NM_197991Re-query CCDS DB by Protein ID:NP_932108Link to BLAST:NP_932108.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932108.3 258 Q3TAS6-1 258 100% 0 0

Chromosomal Locations for CCDS 52231.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44490872 44490970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44491955 44492048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44492144 44492325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44492554 44492658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44493190 44493299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44494808 44494880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44496256 44496369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGGTGGCCGCGGGTGCCGGGGTGACCCGGCTGCTAGTGCTCTTGCTGATGGTAGCCGCGGCTCCTAGCA
GAGCCCGAGGCAGCGGCTGCCGGGTCGGGGCCTCCGCGCGTGGGACCGGGGCCGATGGCCGTGAAGCTGA
GGGCTGTGGCACCGTGGCTTTGCTGCTGGAGCATTCATTTGAGCTCGGTGATGGAGCCAACTTCCAGAAG
CGAGGCTTGCTGCTCTGGAACCAGCAGGATGGCACCCTGTCGGCAACACAGCGACAGCTCAGTGAGGAGG
AGCGTGGCCGACTCCGGGATGTGGCTGCTGTCAATGGCCTCTACAGGGTCCGGGTCCCGAGGCGGCCTGG
GACACTTGATGGTTCAGAAGCTGGCGGCCATGTGTCTTCCTTCGTCCCAGCGTGCTCCCTGGTGGAGTCG
CACCTTTCGGACCAGCTGACCTTGCACGTGGATGTGGCTGGCAACGTGGTGGGCCTGTCTGTGGTGGTGT
ACCCTGGGGGCTGCCGGGGCTCCGAGGTGGAAGATGAGGACCTGGAGCTGTTCAATACATCTGTGCAGCT
GCGGCCTCCCAGCACTGCTCCAGGCCCCGAGACTGCAGCCTTCATTGAGCGCCTGGAGATGGAGCAGGCC
CAGAAGGCCAAGAACCCACAGGAGCAGAAGTCTTTCTTTGCCAAATACTGGATGTACATCATTCCAGTTG
TGCTGTTCCTCATGATGTCGGGAGCGCCGGACGCTGGGGGCCAGGGCGGCGGTGGGGGCGGGGGCAGCAG
CCGGTGA

Translation (258 aa):
MVAAGAGVTRLLVLLLMVAAAPSRARGSGCRVGASARGTGADGREAEGCGTVALLLEHSFELGDGANFQK
RGLLLWNQQDGTLSATQRQLSEEERGRLRDVAAVNGLYRVRVPRRPGTLDGSEAGGHVSSFVPACSLVES
HLSDQLTLHVDVAGNVVGLSVVVYPGGCRGSEVEDEDLELFNTSVQLRPPSTAPGPETAAFIERLEMEQA
QKAKNPQEQKSFFAKYWMYIIPVVLFLMMSGAPDAGGQGGGGGGGSSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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