NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52186.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52186.1 Public Mus musculus 7 Lsr 23 108 98 CCDS HistoryNCBI Gene:54135Re-query CCDS DB by CCDS ID:52186.1Re-query CCDS DB by GeneID:54135See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52186.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108116.9 ENSMUSP00000103751.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108116.9Link to Ensembl Protein Viewer:ENSMUSP00000103751.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108116Re-query CCDS DB by Protein ID:ENSMUSP00000103751
Original member Current member NCBI NM_001164184.1 NP_001157656.1 Accepted alive Link to Nucleotide Sequence:NM_001164184.1Link to Protein Sequence:NP_001157656.1Re-query CCDS DB by Nucleotide ID:NM_001164184Re-query CCDS DB by Protein ID:NP_001157656Link to BLAST:NP_001157656.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157656.1 575 Q99KG5-2 575 100% 0 0

Chromosomal Locations for CCDS 52186.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30957866 30957901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30957989 30958620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30958750 30958881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30958975 30959034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30959153 30959314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30962098 30962244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30965969 30966088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30971868 30972212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30973080 30973173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGGCGCCGGCGGCCAGCGCGTGTGCTGGGGCGCCTGGCTCCCACCCGGCCACCACGATCTTCGTGTGTC
TTTTTCTCATCATTTACTGCCCAGACCGTGCCAGTGCCATCCAGGTGACCGTGCCTGACCCCTACCACGT
AGTGATCCTGTTCCAGCCAGTGACACTACACTGCACCTACCAGATGAGCAATACCCTCACAGCCCCTATC
GTGATCTGGAAGTATAAGTCGTTCTGTCGGGACCGTGTTGCCGACGCCTTCTCCCCTGCCAGCGTGGACA
ACCAGCTCAACGCCCAGCTGGCGGCTGGCAACCCCGGCTACAACCCCTATGTGGAGTGCCAGGACAGCGT
ACGCACTGTCAGGGTGGTGGCCACCAAACAGGGCAATGCTGTGACCCTGGGAGACTACTACCAGGGCAGG
AGAATCACCATCACAGGAAATGCTGACCTGACCTTCGAGCAGACGGCCTGGGGAGACAGTGGAGTGTATT
ACTGCTCCGTGGTCTCAGCCCAAGATCTGGATGGGAACAACGAGGCGTACGCAGAGCTCATTGTCCTTGA
TTGGCTCTTTGTGGTCGTGGTCTGCCTGGCAAGCCTCCTCTTCTTCCTCCTCCTGGGCATCTGCTGGTGC
CAGTGCTGTCCCCACACCTGCTGCTGCTATGTCAGATGTCCCTGCTGCCCAGACAAGTGCTGTTGCCCTG
AGGCCCTTTATGCTGCTGGCAAAGCAGCCACCTCAGGTGTGCCAAGCATCTATGCCCCCAGCATCTATAC
CCACCTCTCTCCTGCCAAGACTCCGCCACCTCCGCCTGCCATGATTCCCATGCGTCCTCCCTATGGGTAC
CCTGGAGACTTTGACAGGACCAGCTCAGTTGGTGGCCACAGCTCCCAGGTGCCCCTGCTGCGTGAAGTGG
ATGGGAGCGTATCTTCAGAAGTACGAAGTGGCTACAGGATCCAGGCTAACCAGCAAGATGACTCCATGAG
GGTCCTATACTATATGGAGAAGGAGCTAGCCAACTTCGATCCTTCCCGGCCTGGCCCTCCCAATGGCCGA
GTGGAACGGGCCATGAGTGAAGTAACCTCCCTCCATGAAGATGACTGGCGATCTCGGCCTTCCAGGGCTC
CTGCCCTCACACCCATCAGGGATGAGGAGTGGAATCGCCACTCCCCTCGGAGTCCCAGAACATGGGAGCA
GGAACCCCTTCAAGAACAGCCAAGGGGTGGTTGGGGGTCTGGGCGGCCTCGGGCCCGCTCTGTGGATGCT
CTAGATGACATCAACCGGCCTGGCTCCACTGAATCAGGAAGGTCTTCTCCCCCAAGTAGTGGACGGAGAG
GGCGGGCCTATGCACCTCCGAGAAGTCGCAGCCGGGATGACCTCTATGACCCCGACGATCCTAGAGACTT
GCCACATTCCCGAGATCCCCACTATTATGATGATTTGAGGTCTAGGGATCCACGTGCTGACCCCAGATCC
CGTCAGCGATCCCACGATCCTCGGGATGCTGGCTTCAGGTCACGGGACCCTCAGTATGATGGGCGACTCT
TAGAAGAGGCTTTAAAGAAAAAAGGGGCTGGGGAGAGAAGACGCGTTTACAGGGAGGAAGAAGAAGAAGA
AGAGGAGGGCCACTATCCCCCAGCACCTCCGCCTTACTCTGAGACTGACTCGCAGGCCTCGAGGGAGCGG
AGGATGAAAAAGAATTTGGCCCTGAGTCGGGAAAGTTTAGTCGTCTGA

Translation (575 aa):
MAPAASACAGAPGSHPATTIFVCLFLIIYCPDRASAIQVTVPDPYHVVILFQPVTLHCTYQMSNTLTAPI
VIWKYKSFCRDRVADAFSPASVDNQLNAQLAAGNPGYNPYVECQDSVRTVRVVATKQGNAVTLGDYYQGR
RITITGNADLTFEQTAWGDSGVYYCSVVSAQDLDGNNEAYAELIVLDWLFVVVVCLASLLFFLLLGICWC
QCCPHTCCCYVRCPCCPDKCCCPEALYAAGKAATSGVPSIYAPSIYTHLSPAKTPPPPPAMIPMRPPYGY
PGDFDRTSSVGGHSSQVPLLREVDGSVSSEVRSGYRIQANQQDDSMRVLYYMEKELANFDPSRPGPPNGR
VERAMSEVTSLHEDDWRSRPSRAPALTPIRDEEWNRHSPRSPRTWEQEPLQEQPRGGWGSGRPRARSVDA
LDDINRPGSTESGRSSPPSSGRRGRAYAPPRSRSRDDLYDPDDPRDLPHSRDPHYYDDLRSRDPRADPRS
RQRSHDPRDAGFRSRDPQYDGRLLEEALKKKGAGERRRVYREEEEEEEEGHYPPAPPPYSETDSQASRER
RMKKNLALSRESLVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH