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Report for CCDS52163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52163.1 Public Mus musculus 7 Lrfn1 23 108 98 CCDS HistoryNCBI Gene:80749Re-query CCDS DB by CCDS ID:52163.1Re-query CCDS DB by GeneID:80749See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52163.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108288.8 ENSMUSP00000103923.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108288.8Link to Ensembl Protein Viewer:ENSMUSP00000103923.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108288Re-query CCDS DB by Protein ID:ENSMUSP00000103923
Original member NCBI NM_001141921.1 NP_001135393.1 Updated not alive Link to Nucleotide Sequence:NM_001141921.1Link to Protein Sequence:NP_001135393.1Re-query CCDS DB by Nucleotide ID:NM_001141921Re-query CCDS DB by Protein ID:NP_001135393
Current member NCBI NM_001141921.2 NP_001135393.1 Accepted alive Link to Nucleotide Sequence:NM_001141921.2Link to Protein Sequence:NP_001135393.1Re-query CCDS DB by Nucleotide ID:NM_001141921Re-query CCDS DB by Protein ID:NP_001135393Link to BLAST:NP_001135393.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135393.1 766 Q2WF71-1 766 100% 0 0

Chromosomal Locations for CCDS 52163.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28458658 28460063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28466589 28467483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2301 nt):
ATGGCTCCAGGCCCCTTCTCCTCCGGGCTCTTTTCGCCACCACCTGCTGCTCTTCCCTTTCTGCTGTTGC
TCTGGGCAGGAGCATCTCGAGGCCAGCCCTGCCCTGGTCGCTGCATCTGTCAGAACGTGGCACCTACGCT
GACCATGCTGTGTGCGAAGACGGGCCTGCTCTTTGTGCCACCCGCCATCGACAGGCGTGTGGTAGAGCTG
CGGCTCACTGACAACTTCATTGCGGCTGTGCGTCGTCGAGACTTCGCCAATATGACCAGCCTGGTCCACC
TCACCCTGTCTCGCAACACCATTGGCCAGGTAGCAGCCGGCGCCTTTGCTGACCTCCGGGCTCTCCGGGC
CCTGCACCTTGACAGCAACCGCCTGGCAGAGGTGCGAGGGGATCAGCTCCGGGGCTTGGGTAACCTCCGC
CACTTGATCCTCGGCAACAATCAGATCCGTAAGGTGGAGTCGGCAGCCTTTGACGCCTTCCTGTCCACCG
TGGAGGACCTGGATCTATCCTACAACAACCTGGAGGCACTGCCATGGGAGGCGGTGGGTCAGATGGTGAA
CTTGAACACCCTCACGCTGGACCACAACCTCATTGATCACATTGCGGAGGGCACCTTCGTGCAGCTGCAC
AAACTCGTGCGCTTGGACATGACCTCCAACCGTCTACATAAATTGCCCCCCGACGGACTGTTCCTGAGGT
CCCAGGGCGGTGGGCCCAAGCCACCCACCCCATTGACGGTCAGCTTCGGTGGCAACCCGCTGCACTGCAA
CTGTGAACTGCTCTGGCTTCGGCGCCTGACCAGGGAGGACGACTTGGAGACGTGTGCCACGCCCGAGCAT
CTCACTGACCGCTATTTCTGGTCCATCCCGGAGGAGGAATTTCTATGTGAGCCCCCGCTCATCACACGGC
AAGCAGGGGGCCGGGCCCTGGTGGTAGAGGGCCAGGCTGTCAGTCTGCGCTGCCGGGCTGTGGGTGACCC
CGAGCCCGTGGTGCATTGGGTGGCACCTGATGGACGGCTGCTGGGGAACTCCAGCCGGACTCGGGTCCGT
GGTGACGGAACGCTGGATGTGACTATCACCACCCTGAGGGACAGCGGTACCTTCACTTGCATAGCCTCCA
ATGCTGCGGGGGAAGCCACAGCACCTGTGGAGGTATGTGTGGTACCTCTGCCACTGATGGCGCCCCCACC
CGCTGCCCCGCCGCCTCTCACTGAACCTGGTTCTTCTGACATCGCCACACCAGGCAGACCTGGTGCCAAC
GACTCAACCAGTGAGCGCAGGCTTGTGGCTGCTGAACTCACGTCTAGCTCTGTGCTCATCCGCTGGCCGG
CCCAGAGGCCAGTGCCTGGCATCCGTATGTACCAAGTGCAATACAACAGCTCTGCAGATGACTCCCTAGT
CTACAGGATGATCCCTTCTACCAGCCAGACCTTCCTAGTGAATGACCTGGCGGCTGGCCGCGCCTATGAT
TTGTGTGTGTTGGCAGTCTATGACGACGGGGCCACCGCTCTGCCGGCTACCAGAGTGGTGGGCTGTGTGC
AATTCACCACCGCGGGAGATCCTGCACCATGCCGCCCGCTGAGGGCCCATTTCTTGGGCGGCACCATGAT
CATCGCCATCGGGGGCGTCATCGTAGCCTCGGTCCTCGTTTTCATCGTTCTGCTCATGATTCGCTACAAG
GTGTACGGAGATGGGGACAGCCGCCGCATCAAGGGGACGTCCAGGACGCCCCCTCGGGTCAGCCACGTGT
GCTCTCAGACCAACGGCGCAGGTGCGCAGCAGGCCTCCGCCCCACCAGCTCCAGACCGCTACGAGGCGCT
GCGGGAGGTGGCTGTCCCTGCGGCCATCGAGGCAAAGGCCATGGAGGCCGAGGCGACTTCCACTGAGCTA
GAGGTGGTGCTTGGACGCTCTCTGGGTGGCTCCGCCACCTCGCTGTGCTTGCTGCCCTCCGAGGAAACTT
CTGGGGAGGAATCTAGGGCCATGACCGGCCCTCGAAGGAGCCGTTCGGGGGCCTTGGGGCCTCCAACTTC
AGCGCCCCCAACGCTAGCTCTGGTTCCTGGGGGAGCCCCGGCCCGACCGAGGCCACAACAACGCTATTCC
TTCGACGGGGACTACGGGGCGCTGTTCCAGAGTCACAGTTACCCGCGCCGCGCCCGGCGGACAAAGCGCC
ACCGGTCCACGCCACACCTGGACGGGGCCGGAGGGGGCGCGGCCGGGGAGGACGGAGACCTGGGGCTGGG
CTCCGCCCGGGCACGCCTGGCCTTCACCAGCACCGAATGGATGCTGGAGAGTACCGTGTGA

Translation (766 aa):
MAPGPFSSGLFSPPPAALPFLLLLWAGASRGQPCPGRCICQNVAPTLTMLCAKTGLLFVPPAIDRRVVEL
RLTDNFIAAVRRRDFANMTSLVHLTLSRNTIGQVAAGAFADLRALRALHLDSNRLAEVRGDQLRGLGNLR
HLILGNNQIRKVESAAFDAFLSTVEDLDLSYNNLEALPWEAVGQMVNLNTLTLDHNLIDHIAEGTFVQLH
KLVRLDMTSNRLHKLPPDGLFLRSQGGGPKPPTPLTVSFGGNPLHCNCELLWLRRLTREDDLETCATPEH
LTDRYFWSIPEEEFLCEPPLITRQAGGRALVVEGQAVSLRCRAVGDPEPVVHWVAPDGRLLGNSSRTRVR
GDGTLDVTITTLRDSGTFTCIASNAAGEATAPVEVCVVPLPLMAPPPAAPPPLTEPGSSDIATPGRPGAN
DSTSERRLVAAELTSSSVLIRWPAQRPVPGIRMYQVQYNSSADDSLVYRMIPSTSQTFLVNDLAAGRAYD
LCVLAVYDDGATALPATRVVGCVQFTTAGDPAPCRPLRAHFLGGTMIIAIGGVIVASVLVFIVLLMIRYK
VYGDGDSRRIKGTSRTPPRVSHVCSQTNGAGAQQASAPPAPDRYEALREVAVPAAIEAKAMEAEATSTEL
EVVLGRSLGGSATSLCLLPSEETSGEESRAMTGPRRSRSGALGPPTSAPPTLALVPGGAPARPRPQQRYS
FDGDYGALFQSHSYPRRARRTKRHRSTPHLDGAGGGAAGEDGDLGLGSARARLAFTSTEWMLESTV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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