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Report for CCDS52043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52043.1 Public Mus musculus 7 Pnma8b 23 108 98 CCDS HistoryNCBI Gene:434128Re-query CCDS DB by CCDS ID:52043.1Re-query CCDS DB by GeneID:434128See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52043.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094807.5 ENSMUSP00000092401.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094807.5Link to Ensembl Protein Viewer:ENSMUSP00000092401.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000094807Re-query CCDS DB by Protein ID:ENSMUSP00000092401
Original member Current member NCBI NM_001099636.2 NP_001093106.1 Accepted alive Link to Nucleotide Sequence:NM_001099636.2Link to Protein Sequence:NP_001093106.1Re-query CCDS DB by Nucleotide ID:NM_001099636Re-query CCDS DB by Protein ID:NP_001093106Link to BLAST:NP_001093106.1

Chromosomal Locations for CCDS 52043.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16945093 16947078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1986 nt):
ATGACGATGAACCTTCTGCAAGATTGGTGTAAGGAGCTGGAAGTGGAGGTGCACAGGGCCCTCCTGATCA
CGGGCATCCCTGAGCGCCTGCAGCAGGCGGACATCGAAGCTACCCTGAGTCCGAACTTGCAGCCCCTGGG
CAACTACAGGCTTCGGACTGTGAGAGCTGTAACCAAAGAGAAGTCTCAGGCAGCCCTTGTAGAATTTGGG
GCAGACTTCGATCACTCTGCCATACCTATCCACATTAGGGGAGAGAATGGGATTTGGAAAATCCTGAGTA
AGGACCGCGGGCAAGATGCGCGGGTCCTTAGGCAGATGAGGCGCCTGTTGCTGGATGAAAGGCCCATGGA
TGACTTCAGAGAAATAGCCATCCCTCTGGTATTGGAGGCCCAAGCCCAGGCCAAGGGATTAGGGAAGGAG
GCCAAGAAGGCTGGCTCCTCTGAAGGGGCAGCTAGGAGCGGCCGTCGGGGCCGTCGGGGAGGCAAGCGCC
GATCCAGAAGCCACAAGTTGACGGCTCAGAAGGGCCAGAAGAGGAGCCGGGGAGGGCGGCGAGCCAGGAG
TGAGTCGGAAGACTCTTCTGATGACAGCCTGGGTATCGTCATAGAGGAGATCTACGCAGAGGACCTGAGC
GTAGATGAAGACCAGAGGGCCCTGTATGCCACGCTCCAAGCAGCTGCCAAAGAGCTCACCAAGAAGTGGG
CCTTTCGGGGTGACCAGGAAGAAGGAGATGGCCCCCGAGAATTCTTGGCACTTGTCACTGTCACCGACAA
AGCTAAGAAGGAAGAGATAGAGAAAGACCTTCCTGGGACAGAGTCTATCTGCTTAAACATCAAAGACGAA
AAGAGCGGGGTTCCTGATTTAGTCGCGCTACTGGCTGTGAGAGATACCCCCGCAGTGGAGGTAGAGACAG
AGGTGGATGATGATGATGAAGATGACGAAGATGAAGATGATGAAGATGATGACGAAGATGAAGATGACGA
TGAAGATGATTCCGACAGCGAGTCTCTGGAAAATGGAGAGCACGGAAAGGAAGTGATGGATAGCCCCGAG
TTTGTGGCTATTGTGGCTTATACAGACCCCGCTGACCCCTCTGCCAGAGAGGAAATGCTAAAAATAGCTT
CTGTGATTGAGACCCTCGGCTGGGGCGACAAAAAAGACAAAAAAGATGTCCTTCCTCAAGTCCTGTCCGT
CATGGCTAAGGACACCTCTGGGCCCAGGGTGAAGGTAGAGGAGGCAGGTCGTCAGGTGGACGCCATGGTC
CTGAGGAAGGCAGAGGAAGATGGGAATCTTCTGGAATGTATTTCTACCTTGGCTGAGGCAGAGAACTGCC
CTAAGGGAAAGAAGTCTGGGCTAGGTCTCCTCAGAGGCTGGACCGCTGAGGGCCACCAGGGTGGCCTATT
GGAGCTGGTGGCACTCTTGGCTGCGCAAGATATGGTGGAAGCTGTGAGAGAAGAAGAAGCCAGCAGGTGG
GGCAGTGGTGGAAGTGGTGGCCGGAAGTGTGACCATAGCCAAGGTGGTTTATCTGAGGTCCTGGCTTTCC
TGGCCTCCCAGGAGAATCTAGAATCCAACGAGGAATCGGACGAGGATTCAGACACAGAGTCAGAGGGAGA
TTCCGAGGACACTGACAGCGAAGAGTCCGAACCTGGTGACAGCGTGTCCAAGAAGCCGCGCGCCAAGAGA
GCGCGCACAGGCTCCAAAGGCCTCCCACCGGCCGGCGCCACCGCGGTCTCCACCGCATCCCGGGCACGCA
AAGCCCGCAGGGGTGGCCGCGGTCGTGGCCGGGCTGTCACCCCAGAGAAGAAAACGGGGAGCGGGGTTTC
AACCGAGGACCATGCGGGGAACAACAACAAGAAGAAGAAGGGATCCGCAGGAGCCGGGGCCCGTGCCAGG
GCTGGCGAGGCCAAGGGACAGCCAGCTGCTGTTCCCAAGTCTACCCGCGGAAAGAAAGCACGCAGGGGCC
CAAGGCGGGCGCCCAAATGCCGTTAG

Translation (661 aa):
MTMNLLQDWCKELEVEVHRALLITGIPERLQQADIEATLSPNLQPLGNYRLRTVRAVTKEKSQAALVEFG
ADFDHSAIPIHIRGENGIWKILSKDRGQDARVLRQMRRLLLDERPMDDFREIAIPLVLEAQAQAKGLGKE
AKKAGSSEGAARSGRRGRRGGKRRSRSHKLTAQKGQKRSRGGRRARSESEDSSDDSLGIVIEEIYAEDLS
VDEDQRALYATLQAAAKELTKKWAFRGDQEEGDGPREFLALVTVTDKAKKEEIEKDLPGTESICLNIKDE
KSGVPDLVALLAVRDTPAVEVETEVDDDDEDDEDEDDEDDDEDEDDDEDDSDSESLENGEHGKEVMDSPE
FVAIVAYTDPADPSAREEMLKIASVIETLGWGDKKDKKDVLPQVLSVMAKDTSGPRVKVEEAGRQVDAMV
LRKAEEDGNLLECISTLAEAENCPKGKKSGLGLLRGWTAEGHQGGLLELVALLAAQDMVEAVREEEASRW
GSGGSGGRKCDHSQGGLSEVLAFLASQENLESNEESDEDSDTESEGDSEDTDSEESEPGDSVSKKPRAKR
ARTGSKGLPPAGATAVSTASRARKARRGGRGRGRAVTPEKKTGSGVSTEDHAGNNNKKKKGSAGAGARAR
AGEAKGQPAAVPKSTRGKKARRGPRRAPKCR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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