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Report for CCDS52018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52018.1 Reviewed, update pending Mus musculus 7 Vmn2r53 23 108 98 CCDS HistoryNCBI Gene:637908Re-query CCDS DB by CCDS ID:52018.1Re-query CCDS DB by GeneID:637908See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 52018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170412.1 ENSMUSP00000126979.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170412.1Link to Ensembl Protein Viewer:ENSMUSP00000126979.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170412Re-query CCDS DB by Protein ID:ENSMUSP00000126979
Original member NCBI NM_001104644.1 NP_001098114.1 Updated not alive Link to Nucleotide Sequence:NM_001104644.1Link to Protein Sequence:NP_001098114.1Re-query CCDS DB by Nucleotide ID:NM_001104644Re-query CCDS DB by Protein ID:NP_001098114
Current member NCBI NM_001104644.2 NP_001098114.2 Pending alive Link to Nucleotide Sequence:NM_001104644.2Link to Protein Sequence:NP_001098114.2Re-query CCDS DB by Nucleotide ID:NM_001104644Re-query CCDS DB by Protein ID:NP_001098114Link to BLAST:NP_001098114.2

Chromosomal Locations for CCDS 52018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12581470 12582446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12584703 12584826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12598401 12598637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12600649 12601446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12606260 12606544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2421 nt):
ATGTGGAGCTACCGGGTAGCCCAGAGTTTCGTCTTTGCCATTGAGGAGATTAATAGGAGTGCTCACTTGT
TGCCCAATTTGACACTGGGCTTCTCCATTCGAAACTCTGGAGACTCAGTGCATGGAGCGCTCTATGAGAC
AATGGGCTTTCTCACAGGGCAGGAGGAGCCCATCCCCAACTACACATGCCAGCATGGCTCTCCTCAGGCT
GCCTTGGTTGGGGACACACGGTCTTCCCTGTCTGTCTCCATGGCCAGACTTCTGGGGCTGTACAAGTTTC
CCCAGGTCAGTTACTCATCTTCACTACCCAGTCTGAGTGACAAGATCCAGTTTCCATCCTTCATTCGGAC
CCTGACTAGTGACCTAACATGCTCCCATGCAGTTACCCAGCTGGTAATTCACTTTCAATGGTCCTGGGTG
ATCATTCTTGCCCATGATGATGACTTTGGGCAGCAGGCCAGCTCTCTGGCCACACAGATGTTGACCCCAG
CTGGTGTGTGCATTGAGTATCACCTTCACGTCCCTTCCCATCAGTCCTTTGGGAAGATTGAAGAGACTGT
CCAGAAGATGCAGAAATGTACAGCCAGAGTTGTTTTGGTTTTCTTAAGCAATTCAAATTTCCAGCTCATC
CTACATGGCTTACTGGCTGTCCCTGTCTCAGGACAGGTGTGGGTCAGCATGGACACTCTGCACATGGCAC
TTGCCCTGACCATACCAGGCATTTCCCAGGTGTTGCAAGGCACATTTGGCCTTCTGTATCACAGCAGCAG
GGCTATTGGCTTCCCTGAGTTCCTTGCTCACCTGCGCCCCAGCCAGACCCCAGAAGACATGTTTATAAAG
AAGTTCTGGGAGTTCACCTTTGATTGTACATGGCCCTACCAAAACAGCACAGTGACAGAGGGTGTCCAGT
TCTGCACAGGAAATGAGAGTCTGAAAAACAAGCCACATCCCTTTCCAGAAGTGAGTAGAATTGATGCTGC
TTACACAGCTGTCTACAGCATTGCCCATGCTCTGCACAATATGCTAGCCTGTGAGCACCAGGAGAGGAAA
GGTACAAACTCTCACAACTTCCATTCCTGGCAGCTGCTTCATAACCTCAGAAATGTGTACTTCAAGACTT
CTGATGGAAATAAGATTATGTTTGATGCCAATGGAGATTTGGTGACACAATTTGACATTTTCCAAGGGAA
GAAGACTCCTGCAGGTGTATTCCACTTGGTGCATGTAGGCTTGATAGACCCTCAAGCCTCTTCAGGAAAC
AAAATGATGGTCCAGTTGAAGCAGGATCTCCAAGTGAGTTCTCTAAATGCAGAGATAACTGTGCCCACCT
CCATCTGCAGTGAAAGCTGCCTTCCAGGGTTCAGCCAGGTACCCCGACTGGGAGCCCCCCACTGCTGTTT
TGATTGCAGTCCATGCCCTGAGGGACAGTTTACAGACCAAAGAGACATGAAGAGATGCCTTCTGTGCCCC
AAGGAGCAGTACTCGAGCCACACCAGAGACCATTGCCTGCCCAGGACAGAGATCTTCTTGGCCTTTGAGG
AACCACTGGGATTCATATTGGCTTTGGTAGCACTCTTGCTGGCTGGTCTGGCTGTCCTGGTTCTTGGAGT
GTTCCTGAAGCACCGGGATACACCTGTGGTCAGGGCCAACAACAGAACTCTCAGCTACTTCCTCCTGATC
TCTCTTTCTTTGTGTGCCCTGTGTGCCTTGCTCTTCCTTGGGAGACCCACTGTTACTACCTGCCTCCTCC
GTCAGACCATCTTTGCTGTGGTATTCACAGTGGCTGTCTCCTCCGTTCTGGCTAAGACTCTAACAGTGGT
CTTGGCCTTCCGAGTCACCAGGCCACGAAGCAGGATCCAGGTATGCCTGAGCTCTGGTGCTTCTACCTCA
GTGGTCCTCATTGCTTCCTTAATACAGGTTGTTCTTTGTGGGATATGGTTGATTACCTCTCCACCATTCC
CAGACAGGGATATGATCTCAGAGCCCCGGCACACTGTCATCCAATGCCATGAGGGTTCTGGAGCCAACTT
CTTCTGTGTGCTGGGTTTCTTGGGTTTCCTGGCAGGGGGTACCTTCTCTGTGGCTTTTCTAGCCAGGGGC
CTTCCAGATGTCTTCAATGAGACCAAGTTCCTCACCTTCAGCATGCTGCTCTTCTGCAGTGTCTGGACAG
CCTTCCTTCCCCTGTACCATAGTGCCCGGGGAAAGTCCACTGTGGCTGTAGAGATCTTTTCCATCCTGGC
CTCCACTGCTGGGCTTCTGGGTGGCATCTTCATCCCCAAGTGCTACATCATCTTGCTGAAACCTGAGAAG
AACACCCCTGCCTGGTTAAGGCAAGGCCACCAGGTACAGCACAATAGGCAGTGTGAGATGCTCCAGAGAA
GGTGTGTGTCCTCAGGAGAGTCACTAGGATCAAGTTTATGA

Translation (806 aa):
MWSYRVAQSFVFAIEEINRSAHLLPNLTLGFSIRNSGDSVHGALYETMGFLTGQEEPIPNYTCQHGSPQA
ALVGDTRSSLSVSMARLLGLYKFPQVSYSSSLPSLSDKIQFPSFIRTLTSDLTCSHAVTQLVIHFQWSWV
IILAHDDDFGQQASSLATQMLTPAGVCIEYHLHVPSHQSFGKIEETVQKMQKCTARVVLVFLSNSNFQLI
LHGLLAVPVSGQVWVSMDTLHMALALTIPGISQVLQGTFGLLYHSSRAIGFPEFLAHLRPSQTPEDMFIK
KFWEFTFDCTWPYQNSTVTEGVQFCTGNESLKNKPHPFPEVSRIDAAYTAVYSIAHALHNMLACEHQERK
GTNSHNFHSWQLLHNLRNVYFKTSDGNKIMFDANGDLVTQFDIFQGKKTPAGVFHLVHVGLIDPQASSGN
KMMVQLKQDLQVSSLNAEITVPTSICSESCLPGFSQVPRLGAPHCCFDCSPCPEGQFTDQRDMKRCLLCP
KEQYSSHTRDHCLPRTEIFLAFEEPLGFILALVALLLAGLAVLVLGVFLKHRDTPVVRANNRTLSYFLLI
SLSLCALCALLFLGRPTVTTCLLRQTIFAVVFTVAVSSVLAKTLTVVLAFRVTRPRSRIQVCLSSGASTS
VVLIASLIQVVLCGIWLITSPPFPDRDMISEPRHTVIQCHEGSGANFFCVLGFLGFLAGGTFSVAFLARG
LPDVFNETKFLTFSMLLFCSVWTAFLPLYHSARGKSTVAVEIFSILASTAGLLGGIFIPKCYIILLKPEK
NTPAWLRQGHQVQHNRQCEMLQRRCVSSGESLGSSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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