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Report for CCDS51946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51946.1 Public Mus musculus 6 Rergl 23 108 98 CCDS HistoryNCBI Gene:632971Re-query CCDS DB by CCDS ID:51946.1Re-query CCDS DB by GeneID:632971See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51946.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170650.2 ENSMUSP00000131303.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170650.2Link to Ensembl Protein Viewer:ENSMUSP00000131303.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170650Re-query CCDS DB by Protein ID:ENSMUSP00000131303
Original member Current member NCBI NM_001128090.1 NP_001121562.1 Accepted alive Link to Nucleotide Sequence:NM_001128090.1Link to Protein Sequence:NP_001121562.1Re-query CCDS DB by Nucleotide ID:NM_001128090Re-query CCDS DB by Protein ID:NP_001121562Link to BLAST:NP_001121562.1

Chromosomal Locations for CCDS 51946.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 139493214 139493496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139494818 139494966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139496468 139496541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139500721 139500777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139501823 139501874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGGTGAGGTCAAGCTTGCTGTCTTGGGTGGCAAAGGTACAGGGAAATCAGCTCTTACAGTAAGGTTCC
TTACCAAGCGATTCATTGGGGAATATGCTTCTAATTTTGAATCTGTCTATAATAAGCACTTGTGTTTGGA
AGGGAAGCCATTAAATCTGGAAATATATGACCCGTGTTCTCAACCACAGAAAGCAAAATGCTCACTCACA
AGTGAGCTGCACTGGGCAGATGGCTTTCTGATTGTGTACGACATCAGCAACAGGCCTTCCTTTGCTTTTG
CGCAAGCCCTTATCTACAGAATTCGGGAGCCACCGACGACTCATTGTAAAAGGGTGGTGGAACCAGCTGT
GGTTTTAGTTGGCAACAAGCAAGACCTCTGCCACATGCGAGAGGTTGGCTGGGAAGAAGGGCAAAAGCTA
GCGATTGATTTCCGCTGCCAGTTCTGCGAGCTGTCTGCAGCAGAGCAGTCCTTGGAGGTCGAGGTGATGT
TTCTCAGACTCATCAAAGACATTCTGATGATCTTCAAACATAAGGAGAAGAGAAGACCCAGTGGGTCTAA
ATCAATGGCCAAACTGATCAATAATGTATTCGGAAAGAGAAGGAAATCTGTTTAG

Translation (204 aa):
MGEVKLAVLGGKGTGKSALTVRFLTKRFIGEYASNFESVYNKHLCLEGKPLNLEIYDPCSQPQKAKCSLT
SELHWADGFLIVYDISNRPSFAFAQALIYRIREPPTTHCKRVVEPAVVLVGNKQDLCHMREVGWEEGQKL
AIDFRCQFCELSAAEQSLEVEVMFLRLIKDILMIFKHKEKRRPSGSKSMAKLINNVFGKRRKSV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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