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Report for CCDS5194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5194.1 Public Homo sapiens 6 HECA 24 110 108 CCDS HistoryNCBI Gene:51696Re-query CCDS DB by CCDS ID:5194.1Re-query CCDS DB by GeneID:51696See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5194.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367658.3 ENSP00000356630.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367658.3Link to Ensembl Protein Viewer:ENSP00000356630.2Re-query CCDS DB by Nucleotide ID:ENST00000367658Re-query CCDS DB by Protein ID:ENSP00000356630
Original member Current member NCBI NM_016217.3 NP_057301.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016217.3Link to Protein Sequence:NP_057301.1Re-query CCDS DB by Nucleotide ID:NM_016217Re-query CCDS DB by Protein ID:NP_057301Link to BLAST:NP_057301.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057301.1 543 Q9UBI9 543 100% 0 0

Chromosomal Locations for CCDS 5194.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 139135397 139135667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139166284 139167324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139174385 139174539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139176941 139177105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGCCCAACCCCAAAAACAGCAAAGGCGGCCGCAAAAACAAGCGCGCCAACAGCAGCGGCGACGAGCAGG
AAAATGGAGCCGGGGCCCTGGCAGCGGCGGGCGCGGCGGGAGCGGCGGCCGGGGGGGCCCTGGCGGCGGC
GGCCGGTTGCGGGGCGGCGGCGGCGGGCGCGCCGGGCGCCGGAGGCGCGGCGGGCGCCGGAGGCGCGGGG
ACTGGCGCCGCGAACGCTGCGGCCGCCGCGGGGGCTGCGGCCGCGGGCGATGCCAAAAACGAAGCCCCAT
GTGCCACTCCCCTGATCTGCAGCTTCGGTAGGCCGGTGGACCTGGAGAAGGACGACTACCAGAAGGTGGT
GTGCAACAACGAGCACTGCCCCTGCAGCACCTGGATGCACCTGCAGTGCTTCTACGAGTGGGAGAGCAGC
ATCCTCGTCCAGTTCAACTGCATCGGCCGCGCGCGCAGCTGGAACGAGAAGCAATGCCGCCAGAACATGT
GGACAAAGAAGGGCTACGACCTGGCCTTCCGCTTCTGCTCTTGCCGCTGTGGCCAGGGCCACTTGAAGAA
GGACACAGACTGGTATCAGGTGAAGCGGATGCAGGACGAGAAAAAGAAGAAGTCTGGCTCCGAGAAGAAC
ACAGGGAGGCCTCCTGGTGAGGCGGCGGAGGAGGCAAAAAAGTGCAGGCCCCCAAATAAGCCCCAGAAAG
GCCCAAGCCACGACCTCCCCCGCCGGCATTCCATGGACCGGCAGAACTCCCAGGAGAAGGCAGTGGGTGC
CGCAGCCTACGGTGCCCGTTCCCCCGGTGGCTCCCCGGGCCAGTCCCCACCCACGGGCTACTCCATCCTC
TCTCCTGCCCACTTCAGCGGCCCCCGCTCCTCCAGATACCTCGGGGAGTTCTTAAAGAACGCCATCCATC
TGGAGCCTCACAAGAAGGCCATGGCTGGGGGCCATGTGTTCAGAAATGCCCACTTTGATTACAGCCCTGC
GGGGTTGGCAGTTCACAGGGGGGGACACTTCGACACCCCCGTGCAGTTCCTTCGGCGGCTGGACCTCTCC
GAACTCCTCACTCACATCCCCAGGCATAAGCTGAACACTTTCCACGTGCGCATGGAAGACGATGCCCAAG
TGGGCCAGGGGGAAGACTTGCGGAAGTTCATTCTGGCCGCGCTCAGTGCCAGCCACAGAAACGTGGTAAA
CTGTGCCCTGTGCCACCGGGCGCTCCCGGTGTTCGAACAGTTCCCACTGGTGGATGGAACTTTGTTCCTA
AGCCCGTCGAGACATGATGAGATCGAATATGATGTTCCTTGTCACCTTCAAGGGAGACTCATGCATCTGT
ATGCCGTGTGCGTGGACTGCCTGGAAGGGGTTCACAAGATCATCTGCATCAAGTGTAAGTCACGGTGGGA
TGGCAGCTGGCACCAGCTGGGCACTATGTACACCTACGACATCCTGGCTGCCTCTCCATGTTGTCAGGCC
CGCCTGAACTGTAAGCACTGTGGGAAGCCGGTGATCGACGTGAGGATCGGGATGCAGTACTTCTCCGAAT
ATAGCAACGTCCAGCAGTGTCCACACTGTGGGAACCTGGACTACCACTTCGTGAAGCCATTTTCCTCCTT
CAAAGTTCTCGAAGCTTATTGA

Translation (543 aa):
MPNPKNSKGGRKNKRANSSGDEQENGAGALAAAGAAGAAAGGALAAAAGCGAAAAGAPGAGGAAGAGGAG
TGAANAAAAAGAAAAGDAKNEAPCATPLICSFGRPVDLEKDDYQKVVCNNEHCPCSTWMHLQCFYEWESS
ILVQFNCIGRARSWNEKQCRQNMWTKKGYDLAFRFCSCRCGQGHLKKDTDWYQVKRMQDEKKKKSGSEKN
TGRPPGEAAEEAKKCRPPNKPQKGPSHDLPRRHSMDRQNSQEKAVGAAAYGARSPGGSPGQSPPTGYSIL
SPAHFSGPRSSRYLGEFLKNAIHLEPHKKAMAGGHVFRNAHFDYSPAGLAVHRGGHFDTPVQFLRRLDLS
ELLTHIPRHKLNTFHVRMEDDAQVGQGEDLRKFILAALSASHRNVVNCALCHRALPVFEQFPLVDGTLFL
SPSRHDEIEYDVPCHLQGRLMHLYAVCVDCLEGVHKIICIKCKSRWDGSWHQLGTMYTYDILAASPCCQA
RLNCKHCGKPVIDVRIGMQYFSEYSNVQQCPHCGNLDYHFVKPFSSFKVLEAY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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