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Report for CCDS51887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51887.1 Public Mus musculus 6 Rad52 23 108 98 CCDS HistoryNCBI Gene:19365Re-query CCDS DB by CCDS ID:51887.1Re-query CCDS DB by GeneID:19365See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51887.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162461.6 ENSMUSP00000125502.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162461.6Link to Ensembl Protein Viewer:ENSMUSP00000125502.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162461Re-query CCDS DB by Protein ID:ENSMUSP00000125502
Original member NCBI NM_001166381.1 NP_001159853.1 Updated not alive Link to Nucleotide Sequence:NM_001166381.1Link to Protein Sequence:NP_001159853.1Re-query CCDS DB by Nucleotide ID:NM_001166381Re-query CCDS DB by Protein ID:NP_001159853
Current member NCBI NM_001166381.2 NP_001159853.1 Accepted alive Link to Nucleotide Sequence:NM_001166381.2Link to Protein Sequence:NP_001159853.1Re-query CCDS DB by Nucleotide ID:NM_001166381Re-query CCDS DB by Protein ID:NP_001159853Link to BLAST:NP_001159853.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159853.1 420 P43352 420 100% 0 0

Chromosomal Locations for CCDS 51887.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 119911055 119911141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119913002 119913103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119913899 119913992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119914170 119914237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119915234 119915352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119915967 119916042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119918587 119918786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119918926 119919077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119920110 119920190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119920807 119921028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119922472 119922533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGCTGGGCCTGAAGAAGCAGTCCACAGAGGGTGTGACAACCATCCTCCCTTTGTTGGTGGGAAGTCTG
TGCTCCTCTTTGGACAGAGCCAGTATACAGCGGATGAATACCAGGCCATCCAGAAAGCTCTGAGACAGAG
ACTGGGTCCAGAGTACATTAGCAGCCGCATGGCTGGAGGAGGTCAGAAGGTGTGTTATATTGAAGGTCAT
CGGGTAATTAATCTGGCCAATGAGATGTTTGGTTACAATGGCTGGGCACACTCCATCACCCAGCAAAATG
TGGATTTTGTTGACCTCAACAATGGCAAGTTCTACGTGGGAGTCTGTGCATTTGTAAAGGTGCAGTTAAA
GGATGGTTCCTATCATGAGGACGTGGGCTATGGAGTTAGTGAGGGCCTCCGTTCAAAGGCCTTGTCACTG
GAGAAGGCCAGGAAGGAGGCTGTGACTGATGGGCTGAAGCGAGCACTCAGGAGTTTTGGGAATGCACTTG
GAAACTGTATTCTGGACAAAGACTATCTGAGGTCACTAAATAAGCTTCCACGACAGCTCCCTCTTGATGT
GGATTTAACTAAAACAAAGAGAGAAGATTTTGAACCATCTGTAGAACAGGCAAGATACAACAGCTGCCGA
CAGAATGAAGCATTGGGACTCCCCAAACCACAGGAAGTGACTTCCCCTTGCAGATCAAGCCCCCCACATG
ACTCGAACATTAAGCTTCAGGGGGCTAAGGACATCAGCAGCTCCTGCAGTCTGGCCGCCACCTTGGAGAG
TGACGCCACTCACCAGAGGAAGCTCCGGAAGCTCCGGCAGAAGCAGCTCCAGCAGCAGTTCCGGGAACAG
ATGGAGACTCGCCGGCAGAGCCATGCACCTGCCGAAGAGGTGGCAGCCAAGCATGCGGCAGTACTTCCAG
CCCCTCCAAAACACAGCACCCCTGTAACTGCAGCCTCAGAACTCCTCCAGGAGAAAGTCGTCTTTCCAGA
TAACCTTGAAGAGAACCTTGAAATGTGGGACCTTACTCCAGACTTAGAGGACATCATTAAGCCCTTGTGT
AGAGCAGAACCAGCCCAAACTTCTGCCACTCGAACCTTCAACAACCAGGACAGCGTCCCACATATCCATT
GCCATCAGAAACCACAAGAAAAGCCTGGACCTGGGCACCTGCAGACCTGCAACACCAACCAGCATGTTCT
AGGTAGCAGAGAAGACTCTGAACCTCATAGGAAGAGCCAGGACCTGAAGAAAAGGAAACTAGATCCATCC
TGA

Translation (420 aa):
MAGPEEAVHRGCDNHPPFVGGKSVLLFGQSQYTADEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGH
RVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVKVQLKDGSYHEDVGYGVSEGLRSKALSL
EKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLDVDLTKTKREDFEPSVEQARYNSCR
QNEALGLPKPQEVTSPCRSSPPHDSNIKLQGAKDISSSCSLAATLESDATHQRKLRKLRQKQLQQQFREQ
METRRQSHAPAEEVAAKHAAVLPAPPKHSTPVTAASELLQEKVVFPDNLEENLEMWDLTPDLEDIIKPLC
RAEPAQTSATRTFNNQDSVPHIHCHQKPQEKPGPGHLQTCNTNQHVLGSREDSEPHRKSQDLKKRKLDPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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