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Report for CCDS51881.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51881.1 Public Mus musculus 6 Tmcc1 23 108 98 CCDS HistoryNCBI Gene:330401Re-query CCDS DB by CCDS ID:51881.1Re-query CCDS DB by GeneID:330401See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51881.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088896.9 ENSMUSP00000086285.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088896.9Link to Ensembl Protein Viewer:ENSMUSP00000086285.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088896Re-query CCDS DB by Protein ID:ENSMUSP00000086285
Original member Current member NCBI NM_177412.1 NP_803131.1 Accepted alive Link to Nucleotide Sequence:NM_177412.1Link to Protein Sequence:NP_803131.1Re-query CCDS DB by Nucleotide ID:NM_177412Re-query CCDS DB by Protein ID:NP_803131Link to BLAST:NP_803131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803131.1 649 Q69ZZ6-1 649 100% 0 0

Chromosomal Locations for CCDS 51881.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116022087 116022401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116024802 116024937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116042871 116043805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116133767 116134330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1950 nt):
ATGGAGCCTTCCGGCAGTGAACAGTTATATGAGGACCCTGATCCTGGAGGCAAATCCCAAGATGCAGAAG
CCAGGAGGCAGACAGAGTCAGAACAAAAGTTATCTAAAATGACCCACAATGCTCTGGAGAACATTAATGT
GATTGGCCAAGGCTTGAAGCATCTCTTCCAGCACCAGCGCAGGAGGTCTTCAGTGTCTCCACACGATGTG
CAGCAGATTCAGACAGATCCAGAGCCTGAAGTGGATCTGGACAGTCAGAACGCATGTGCTGAGATTGATG
GTGTCTCCACCCATCCCACAGCTCTGAATCGTGTTCTCCAGCAGATCCGAGTGCCACCCAAGATGAAGAG
AGGGACAAGCTTGCATAGTAGGCGGGGCAAATCAGAAGCCCCAAAGGGAAGTCCCCAAATCAACAGGAAA
TCTGGCCAAGAGGTGGCAGCTGTAATACAGTCAGGTCGACCCAGGTCTTCATCCACAACTGATGCTCCTA
CCAGCTCTTCTGTGATGGAAATAGCTTGTGCTGCTGGTGTGTGTGTACCTGGAGAGGAGGCAACTGCAGA
ACGGATCGAGCGTTTGGAAGTAAGCAGCCTCGCCCAGACTTCCAGTGCCGTGGCCTCCAGCACTGATGGC
AGCATCCACACAGAGTCTGTGGATGGAATACCAGATCCTCAGCGTACAAAAGCTGCCATTGCACACCTGC
AGCAGAAGATCCTAAAGCTCACAGAACAGATCAAGATTGCACAGACAGCCCGAGACGACAACGTTGCTGA
GTACTTGAAGCTTGCCAACAGTGCAGACAAGCAGCAGGCTGCTCGAATCAAACAGGTGTTTGAGAAGAAA
AACCAGAAATCTGCGCAGACCATTCTCCAGCTGCAAAAGAAGCTTGAGCATTACCACCGAAAGCTCCGTG
AGGTGGAACAGAATGGGATTCCCCGACAGCCCAAGGATGTCTTCAGGGACATGCACCAGGGTCTGAAGGA
TGTGGGTGCAAAGGTGACTGGCTTCAGTGAAGGTGTAGTGGACAGCGTCAAAGGTGGATTTTCCAGCTTC
TCCCAGGCTACCCATTCAGCAGCAGGGGCTGTCGTCTCCAAACCCAGAGAGATTGCCTCACTGATTCGGA
ACAAATTTGGTAGTGCAGACAATATCCCTAACCTGAAAGACTCATTAGAGGAAGGACAAGTGGATGATGG
GGGAAAGGCTTTAGGGGTGATTTCAAACTTTCAGTCAAGTCCAAAATATGGTAGTGAGGAAGATTGTTCT
AGTGCCACTTCAGGCTCAGTAGGAGCCAACAGTACCACTGGGGGCATTGCTGTGGGAGCATCCAGCTCCA
AAACCAACACCCTCGACATGCAGAGCTCAGGGTTTGATGCACTGCTGCATGAGGTCCAGGAGATCCGGGA
AACCCAGGCCAGACTGGAGGACTCCTTCGAGACCCTCAAGGAGCATTATCAGAGGGACTACTCCTTAATA
ATGCAGACCTTACAGGAAGAGCGGTATAGATGTGAGCGACTGGAAGAGCAGCTGAATGACCTGACAGAGC
TGCACCAGAATGAGATCCTGAACTTAAAGCAGGAGTTGGCCAGCATGGAAGAGAAAATCGCCTATCAGTC
ATATGAACGGGCCCGGGATATCCAGGAGGCTCTGGAGGCCTGTCAAACCCGCATTTCCAAGATGGAGCTG
CAGCAGCAACAGCAGCAGGTGGTGCAACTGGAAGGGCTGGAGAATGCCACTGCCCGAAACCTTCTGGGCA
AACTCATCAATATCCTCCTTGCTGTCATGGCAGTTCTCTTGGTCTTTGTGTCAACAGTAGCCAACTGTGT
GGTCCCCCTCATGAAGACACGCAACAGGACGTTCAGCACTTTATTCCTAGTGGCTTTCATTGCCTTTCTT
TGGAAGCACTGGGATGCCCTCTTTAGCTACGTGGACCGGCTCTTCTCACCCCCCAGATGA

Translation (649 aa):
MEPSGSEQLYEDPDPGGKSQDAEARRQTESEQKLSKMTHNALENINVIGQGLKHLFQHQRRRSSVSPHDV
QQIQTDPEPEVDLDSQNACAEIDGVSTHPTALNRVLQQIRVPPKMKRGTSLHSRRGKSEAPKGSPQINRK
SGQEVAAVIQSGRPRSSSTTDAPTSSSVMEIACAAGVCVPGEEATAERIERLEVSSLAQTSSAVASSTDG
SIHTESVDGIPDPQRTKAAIAHLQQKILKLTEQIKIAQTARDDNVAEYLKLANSADKQQAARIKQVFEKK
NQKSAQTILQLQKKLEHYHRKLREVEQNGIPRQPKDVFRDMHQGLKDVGAKVTGFSEGVVDSVKGGFSSF
SQATHSAAGAVVSKPREIASLIRNKFGSADNIPNLKDSLEEGQVDDGGKALGVISNFQSSPKYGSEEDCS
SATSGSVGANSTTGGIAVGASSSKTNTLDMQSSGFDALLHEVQEIRETQARLEDSFETLKEHYQRDYSLI
MQTLQEERYRCERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKMEL
QQQQQQVVQLEGLENATARNLLGKLINILLAVMAVLLVFVSTVANCVVPLMKTRNRTFSTLFLVAFIAFL
WKHWDALFSYVDRLFSPPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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