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Report for CCDS51861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51861.1 Public Mus musculus 6 Mitf 23 108 98 CCDS HistoryNCBI Gene:17342Re-query CCDS DB by CCDS ID:51861.1Re-query CCDS DB by GeneID:17342See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51861.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043637.13 ENSMUSP00000044938.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043637.13Link to Ensembl Protein Viewer:ENSMUSP00000044938.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043637Re-query CCDS DB by Protein ID:ENSMUSP00000044938
Original member NCBI NM_001113198.1 NP_001106669.1 Updated not alive Link to Nucleotide Sequence:NM_001113198.1Link to Protein Sequence:NP_001106669.1Re-query CCDS DB by Nucleotide ID:NM_001113198Re-query CCDS DB by Protein ID:NP_001106669
Current member NCBI NM_001113198.2 NP_001106669.1 Accepted alive Link to Nucleotide Sequence:NM_001113198.2Link to Protein Sequence:NP_001106669.1Re-query CCDS DB by Nucleotide ID:NM_001113198Re-query CCDS DB by Protein ID:NP_001106669Link to BLAST:NP_001106669.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106669.1 526 Q08874-1 526 100% 0 0

Chromosomal Locations for CCDS 51861.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 97807184 97807287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97941053 97941302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97993127 97993354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97994381 97994464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97996374 97996469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98003887 98004004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98006123 98006197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98010395 98010470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98013669 98013816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98017774 98018175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGCAGTCCGAATCGGGAATCGTGGCGGATTTCGAAGTCGGGGAGGAGTTTCACGAAGAACCCAAAACCT
ATTACGAACTCAAAAGTCAACCTCTGAAGAGCAGCAGTTCTGCAGAGCATTCTGGGGCCTCCAAGCCTCC
GTTAAGCTCCTCCACTATGACATCACGCATCTTGCTACGCCAGCAACTCATGCGTGAGCAGATGCAGGAG
CAGGAGCGCAGGGAGCAGCAGCAGAAGCTGCAGGCAGCCCAGTTCATGCAACAGAGAGTGGCCGTGAGTC
AGACACCAGCCATAAACGTCAGCGTGCCCACCACCCTTCCCTCTGCCACCCAGGTGCCGATGGAAGTCCT
TAAGGTGCAGACCCACCTGGAAAACCCCACCAAGTACCACATACAGCAAGCTCAGAGGCACCAGGTAAAG
CAGTACCTTTCTACCACTTTAGCAAATAAACATGCCAGCCAAGTCCTGAGCTCACCATGTCCAAACCAGC
CTGGCGACCATGCCATGCCACCAGTGCCGGGGAGCAGCGCACCCAACAGCCCTATGGCTATGCTCACTCT
TAACTCCAACTGTGAAAAAGAGGCATTTTATAAGTTTGAGGAGCAGAGCAGGGCAGAGAGTGAGTGCCCA
GGTATGAACACGCACTCTCGAGCGTCGTGCATGCAGATGGATGATGTAATTGATGACATCATCAGCCTGG
AATCAAGTTATAATGAAGAAATTTTGGGCTTGATGGATCCGGCCTTGCAAATGGCAAATACGTTACCCGT
CTCTGGAAACTTGATCGACCTCTACAGCAACCAGGGCCTGCCACCGCCAGGCCTTACCATCAGCAACTCC
TGTCCAGCCAACCTTCCCAACATAAAAAGGGAGCTCACAGCGTGTATTTTCCCCACAGAGTCTGAAGCAA
GAGCATTGGCTAAAGAGAGGCAGAAAAAGGACAATCACAACTTGATTGAACGAAGAAGAAGATTTAACAT
AAACGACCGCATTAAGGAGCTAGGTACTCTGATCCCCAAGTCAAATGATCCAGACATGCGGTGGAACAAG
GGAACCATTCTCAAGGCCTCTGTGGACTACATCCGGAAGTTGCAACGGGAACAGCAACGAGCTAAGGACC
TTGAAAACCGACAGAAGAAGCTGGAGCATGCGAACCGGCACCTGCTGCTCAGAGTACAGGAGCTGGAGAT
GCAGGCTAGAGCGCATGGACTTTCCCTTATCCCATCCACCGGTCTCTGCTCGCCTGATCTGGTGAATCGG
ATCATCAAGCAAGAACCAGTTCTTGAGAACTGCAGCCAGGAACTTGTACAGCACCAGGCAGACCTGACAT
GTACGACAACTCTGGATCTCACGGACGGTACCATCACCTTTACCAACAACCTCGGCACCATGCCGGAGAG
CAGCCCGGCCTACAGCATCCCCAGGAAGATGGGCTCCAACTTGGAAGACATCCTGATGGACGATGCCCTC
TCACCTGTTGGAGTCACCGACCCACTGCTGTCATCAGTGTCGCCAGGAGCTTCAAAAACAAGCAGCCGGA
GGAGCAGTATGAGCGCAGAAGAAACGGAGCATGCGTGTTAG

Translation (526 aa):
MQSESGIVADFEVGEEFHEEPKTYYELKSQPLKSSSSAEHSGASKPPLSSSTMTSRILLRQQLMREQMQE
QERREQQQKLQAAQFMQQRVAVSQTPAINVSVPTTLPSATQVPMEVLKVQTHLENPTKYHIQQAQRHQVK
QYLSTTLANKHASQVLSSPCPNQPGDHAMPPVPGSSAPNSPMAMLTLNSNCEKEAFYKFEEQSRAESECP
GMNTHSRASCMQMDDVIDDIISLESSYNEEILGLMDPALQMANTLPVSGNLIDLYSNQGLPPPGLTISNS
CPANLPNIKRELTACIFPTESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNK
GTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQARAHGLSLIPSTGLCSPDLVNR
IIKQEPVLENCSQELVQHQADLTCTTTLDLTDGTITFTNNLGTMPESSPAYSIPRKMGSNLEDILMDDAL
SPVGVTDPLLSSVSPGASKTSSRRSSMSAEETEHAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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