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Report for CCDS51821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51821.1 Public Mus musculus 6 Dguok 23 108 98 CCDS HistoryNCBI Gene:27369Re-query CCDS DB by CCDS ID:51821.1Re-query CCDS DB by GeneID:27369See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51821.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113888.2 ENSMUSP00000109520.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113888.2Link to Ensembl Protein Viewer:ENSMUSP00000109520.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113888Re-query CCDS DB by Protein ID:ENSMUSP00000109520
Original member NCBI NM_001162521.1 NP_001155993.1 Updated not alive Link to Nucleotide Sequence:NM_001162521.1Link to Protein Sequence:NP_001155993.1Re-query CCDS DB by Nucleotide ID:NM_001162521Re-query CCDS DB by Protein ID:NP_001155993
Current member NCBI NM_001162521.2 NP_001155993.1 Accepted alive Link to Nucleotide Sequence:NM_001162521.2Link to Protein Sequence:NP_001155993.1Re-query CCDS DB by Nucleotide ID:NM_001162521Re-query CCDS DB by Protein ID:NP_001155993Link to BLAST:NP_001155993.1

Chromosomal Locations for CCDS 51821.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83480433 83480436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83481347 83481462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83486984 83487131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83490421 83490608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83496686 83496798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83506748 83506889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGCTGCAGGTCGGTTCCTTCTGCGTCGTCTCCGAGCGTCTTTCCGTTCCCCGCTGCGGAACGCGCTCG
TGGACGCGCCACACGCCAGGGCCATGCACGACGGGGGCGGCCCCCGAAGGCTCTGCATTGAAGGCAACAT
CGCTGTGGGCAAATCCACCTTTGTGAAGTTACTCATGAAAACTCACCCGGAGTGGCAGGTGGCGACAGAA
CCTATAGCAGAGTGGCAGAATATTCAGGCTGCTGGAGCCCAAAAAGATGGCACTTCCAAACGTCTTGGAA
ACTTGCTAGAAATGATGTACCAGGAGCCAGCACGATGGTCCTACACATTCCAGACCCTTTCTTTCATGAG
CCGTCTGAAGGTGCAGCTGGAGCCCATCCCAGGGAGACTCCTGCAGGCAGAGAAGTCTGTGCGGGTCTTT
GAGAGGTCTGTGTACAGTGACAGGTATATCTTTGCAAAGAATCTATTTGAAAATGGCTCCCTCAGTGACA
TCGAGTGGCACATCTATCAGGACTGGCACTCCTTTCTCCTGCAGGAGTTCGCAAACCGGCTTTTGTTACA
CGGCTTCATCTATCTCCAGGCTTCACCCCAGGTTTGTATGGAGAGACTCTACCAGAGGGATAGAGAAGAA
GAAAAGGGCATTGAGCTGGCCTATCTTCAACAGCTACATAGTCAGCACGAAGACTGGTTTATTAACAAGA
CTACCAAGTGA

Translation (236 aa):
MAAGRFLLRRLRASFRSPLRNALVDAPHARAMHDGGGPRRLCIEGNIAVGKSTFVKLLMKTHPEWQVATE
PIAEWQNIQAAGAQKDGTSKRLGNLLEMMYQEPARWSYTFQTLSFMSRLKVQLEPIPGRLLQAEKSVRVF
ERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLQEFANRLLLHGFIYLQASPQVCMERLYQRDREE
EKGIELAYLQQLHSQHEDWFINKTTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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