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Report for CCDS51777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51777.1 Public Mus musculus 6 Cpvl 23 108 98 CCDS HistoryNCBI Gene:71287Re-query CCDS DB by CCDS ID:51777.1Re-query CCDS DB by GeneID:71287See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51777.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166545.1 ENSMUSP00000131462.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166545.1Link to Ensembl Protein Viewer:ENSMUSP00000131462.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166545Re-query CCDS DB by Protein ID:ENSMUSP00000131462
Original member Current member EBI ENSMUST00000204674.2 ENSMUSP00000144942.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204674.2Link to Ensembl Protein Viewer:ENSMUSP00000144942.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204674Re-query CCDS DB by Protein ID:ENSMUSP00000144942
Original member Current member NCBI NM_001289713.1 NP_001276642.1 Accepted alive Link to Nucleotide Sequence:NM_001289713.1Link to Protein Sequence:NP_001276642.1Re-query CCDS DB by Nucleotide ID:NM_001289713Re-query CCDS DB by Protein ID:NP_001276642Link to BLAST:NP_001276642.1
Original member Current member NCBI NM_027749.2 NP_082025.1 Accepted alive Link to Nucleotide Sequence:NM_027749.2Link to Protein Sequence:NP_082025.1Re-query CCDS DB by Nucleotide ID:NM_027749Re-query CCDS DB by Protein ID:NP_082025Link to BLAST:NP_082025.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276642.1 478 Q9D3S9-1 478 100% 0 0
NP_082025.1 478 Q9D3S9-1 478 100% 0 0

Chromosomal Locations for CCDS 51777.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 53873414 53873524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53896424 53896606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53925133 53925306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53926810 53926908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53931907 53932038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53932412 53932534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53947719 53947785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53952530 53952609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53953504 53953562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53954510 53954624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53967756 53967874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53974622 53974796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGTTCGTGCCAAGTGGAAGATGGTTGTTTCACTGATCTTGTTTATGGTCAGCCCTGGTGATGGACTGT
TTCATGCAGTATACCGAAGTATCCTTGTTTCCCAGTCCTTCAAGGGGGATGCAGGACAGCCTCTTTTTCT
TAGCCCATACATCAAAAACGGGAAGATCAAGGAGGGGCAAAGGAAGAGCATGGTCAGTCCGTTCCCTGGA
ATGAACGACAAGAGTTATGCCGGCTACATCACGGTGAACCAGACTTACAACAGCAACCTCTTCTTCTGGT
TCTTTCCGGCTCGGATGCAGCCTGAGGATGCCCCAGTAGTCCTCTGGCTTCAGGGTGGACCTGGAGGTTC
ATCCATGTTTGGACTCTTTGTAGAACACGGGCCTTATATTATCACAAGTAACATGACCGTTGTGGCCAGA
GACTTCCCTTGGACCTTTACCCTTTCCATGCTCTACATTGATAATCCGGTGGGTACAGGCTTCAGCTTCA
CCGATCATTTCCAGGGATACGCCACCAGCGAGGATGATGTAGCCCAAGACTTGTACAGTGCCCTGATTCA
GTTCTTCACGTTGTTTCCCGAGTATGCAAAGAATGATTTTTACGTCACTGGCGAGTCTTATGCAGGGAAA
TATGTTCCGGCCCTAGCACACTATATCCACTCCCTCAACCCCGTGCGGAAGTTCAAGATTCGCCTAAAAG
GAATTGCCATTGGAGATGCATACACTGATCCTGAATCGATTATAGGAGGGTATGCGGCATTCCTATATGA
AATTGGCTTGTTGGATGAACAGCAGCAGAAGTACTTCCAGAAGCAGTGTAGCAAGTGCGTAAAATACATC
AAAGAGCAGGAGTGGATGAAGGCCTTTGAAATCCTGGATAAGCTGCTAGATGGAGATGTAACAACTGGTT
CATCTTTCTTCCAGAATGTGACAGGATGTACCAATTACTACAACATTTTACAGTGCACGGAACCCAAGGA
GCAAAGTTACTTTGCAAAATTCTTGACGCTCCCCCAAGTGAGACAAGCCATCCACGTGGGAAACCAGAAC
TTCAGTGACGGTGCTGAGGTTGAGAAGCACCTGCGAGAGGACACAGTGAAGTCGGTGAAGCCCTGGCTGT
CTGAGATCATGAATTACTACAAGGTTCTCATCTACAATGGCCAACTGGACATCATCGTGGCGGCTGCCCT
GACAGAGCGCTCCTTGATGGCCATGGACTGGAAGGGATCCCGAGCATACAGAAGGGCACGTCGAAAGGTC
TGGAAGATCTTCAAATCGGATAATGAAGTGGCTGGTTATGTGAGGCGTGTGGGCAAATTCCATCAGGTAA
TCGTCCGAGGTGGAGGACACATTTTGCCCTATGACCAGCCAATGAGATCTTTTGATATGATCAATCGCTT
CATCTATGACAGAGGATGGGAACCTTATAATTCATAA

Translation (478 aa):
MVRAKWKMVVSLILFMVSPGDGLFHAVYRSILVSQSFKGDAGQPLFLSPYIKNGKIKEGQRKSMVSPFPG
MNDKSYAGYITVNQTYNSNLFFWFFPARMQPEDAPVVLWLQGGPGGSSMFGLFVEHGPYIITSNMTVVAR
DFPWTFTLSMLYIDNPVGTGFSFTDHFQGYATSEDDVAQDLYSALIQFFTLFPEYAKNDFYVTGESYAGK
YVPALAHYIHSLNPVRKFKIRLKGIAIGDAYTDPESIIGGYAAFLYEIGLLDEQQQKYFQKQCSKCVKYI
KEQEWMKAFEILDKLLDGDVTTGSSFFQNVTGCTNYYNILQCTEPKEQSYFAKFLTLPQVRQAIHVGNQN
FSDGAEVEKHLREDTVKSVKPWLSEIMNYYKVLIYNGQLDIIVAAALTERSLMAMDWKGSRAYRRARRKV
WKIFKSDNEVAGYVRRVGKFHQVIVRGGGHILPYDQPMRSFDMINRFIYDRGWEPYNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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