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Report for CCDS51768.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51768.1 Public Mus musculus 6 Malsu1 23 108 98 CCDS HistoryNCBI Gene:75593Re-query CCDS DB by CCDS ID:51768.1Re-query CCDS DB by GeneID:75593See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51768.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000128616.5 ENSMUSP00000122941.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128616.5Link to Ensembl Protein Viewer:ENSMUSP00000122941.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000128616Re-query CCDS DB by Protein ID:ENSMUSP00000122941
Original member Current member NCBI NM_029353.1 NP_083629.1 Accepted alive Link to Nucleotide Sequence:NM_029353.1Link to Protein Sequence:NP_083629.1Re-query CCDS DB by Nucleotide ID:NM_029353Re-query CCDS DB by Protein ID:NP_083629Link to BLAST:NP_083629.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083629.1 228 Q9CWV0 228 100% 0 0

Chromosomal Locations for CCDS 51768.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49073866 49074103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49075086 49075264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49082845 49082926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49084503 49084690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGGGTCCGGGCTGGTCGCCCGCGCGGCGTTTATGGCCGCTGCTGTGGCGCAGGGCGGTCTTCCAGAGAG
CCGGCCCCGCAATGGCTTCGGTTCCCTGGCTTCCGCGGCTGGCAGAGCGATGGCTTCCCGCGAGGCCCGC
GACCTGCCTGACCCCGAGCCTAACGCGCGGCCTGCACCATGGGCCTCAGCCCGAGGAGCGGACCGCTGGC
GACGCTCGCCTGCAGCCCGGACCCGCAGATCACATTGGTGCCAAGTTTGACATCGATATGCTGGTTTCAC
TTCTGAGGCAAGAAAATGCAAGAGACATTTGTGTGATCCAGGTTCCTCCAGAAATGAGATACACAGACTA
CTTTGTGATTGGGAGTGGGACTTCCACCCGACACTTACACGCTATGGTCCACTACCTTGTGAAGATGTAT
AAACACCTGAAATGTAGAAGCGATCCGTATGTCAAGATCGAGGGGAAGGACGCTGACGACTGGCTGTGTG
TGGACTTTGGGAGTATGGTGATCCATTTGATGCTTCCAGAAACCAGAGAAACCTATGAATTAGAGAAACT
ATGGACTCTACGTTCTTTTGATGACCAGTTAGCTCAGATAGCAGCTGAGACGTTACCTGAAGACTTCATT
CTTGGACTGGAAGATGACACTTCATCCCTGACTCCAGTGGAGTTCAAATGTAAATAA

Translation (228 aa):
MGPGWSPARRLWPLLWRRAVFQRAGPAMASVPWLPRLAERWLPARPATCLTPSLTRGLHHGPQPEERTAG
DARLQPGPADHIGAKFDIDMLVSLLRQENARDICVIQVPPEMRYTDYFVIGSGTSTRHLHAMVHYLVKMY
KHLKCRSDPYVKIEGKDADDWLCVDFGSMVIHLMLPETRETYELEKLWTLRSFDDQLAQIAAETLPEDFI
LGLEDDTSSLTPVEFKCK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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