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Report for CCDS5176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5176.1 Public Homo sapiens 6 MTFR2 24 110 108 CCDS HistoryNCBI Gene:113115Re-query CCDS DB by CCDS ID:5176.1Re-query CCDS DB by GeneID:113115See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5176.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420702.6 ENSP00000395232.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000420702.6Link to Ensembl Protein Viewer:ENSP00000395232.1Re-query CCDS DB by Nucleotide ID:ENST00000420702Re-query CCDS DB by Protein ID:ENSP00000395232
Original member Current member EBI ENST00000451457.6 ENSP00000407010.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451457.6Link to Ensembl Protein Viewer:ENSP00000407010.2Re-query CCDS DB by Nucleotide ID:ENST00000451457Re-query CCDS DB by Protein ID:ENSP00000407010
Original member Current member NCBI NM_001099286.3 NP_001092756.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099286.3Link to Protein Sequence:NP_001092756.1Re-query CCDS DB by Nucleotide ID:NM_001099286Re-query CCDS DB by Protein ID:NP_001092756Link to BLAST:NP_001092756.1
Original member Current member NCBI NM_138419.5 NP_612428.2 Accepted alive Link to Nucleotide Sequence:NM_138419.5Link to Protein Sequence:NP_612428.2Re-query CCDS DB by Nucleotide ID:NM_138419Re-query CCDS DB by Protein ID:NP_612428Link to BLAST:NP_612428.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092756.1 385 Q6P444-1 385 100% 0 0
NP_612428.2 385 Q6P444-1 385 100% 0 0

Chromosomal Locations for CCDS 5176.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 136231275 136231388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136233325 136233499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136239466 136239820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136241444 136241676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136242861 136242973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136244765 136244869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136249037 136249099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGTCTCTCATACTGAATATCTTAAGAGAGATGCTGGAATATTTTGGCGTTCCTGTAGAACAGGTTTTGC
TGATTTGGGAAAATAAAGACTATGGATCAACTAGGAGTATTGTTCGTATTATTGGGAAAATGCTTCCACT
GGAACCTTGTCGAAGACCTAATTTTGAGTTGATCCCGCTCTTGAACTCTGTAGACTCTGATAATTGTGGA
TCTATGGTTCCATCTTTTGCTGATATTTTGTATGTGGCAAATGATGAAGAAGCCAGTTATCTCAGATTTC
GAAATAGTATATGGAAAAATGAAGAAGAGAAAGTGGAAATTTTTCATCCTTTGCGACTAGTTCGGGATCC
ACTGTCACCTGCTGTAAGACAGAAAGAAACTGTGAAAAATGACCTGCCTGTAAATGAAGCTGCAATTAGA
AAAATAGCTGCCCTTGAAAATGAGCTGACTTTTCTTCGCTCTCAGATTGCAGCAATTGTGGAAATGCAGG
AACTGAAAAATAGTACAAATTCTAGTTCCTTTGGCTTGAGTGACGAGCGCATTAGTTTGGGTCAGCTGTC
ATCATCGCGGGCTGCCCATCTGAGTGTGGACCCAGATCAGCTTCCAGGTTCAGTGCTTTCTCCTCCTCCT
CCTCCACCACTTCCTCCTCAGTTTTCATCTCTCCAGCCACCGTGTTTTCCTCCCGTACAACCAGGATCTA
ATAATATTTGTGACTCAGATAATCCAGCAACTGAAATGAGCAAACAGAACCCGGCTGCTAATAAGACCAA
TTATAGTCATCATTCAAAAAGCCAGAGAAATAAAGATATTCCAAACATGTTGGACGTTCTAAAGGATATG
AATAAGGTTAAGCTTCGTGCAATTGAGCGGTCACCTGGCGGTAGACCCATTCATAAGAGGAAAAGACAGA
ATTCACATTGGGATCCAGTTTCTTTAATATCTCATGCACTTAAACAGAAATTTGCATTTCAAGAAGATGA
TTCTTTTGAGAAAGAGAATAGATCTTGGGAATCTTCCCCATTTTCTAGTCCAGAAACTTCAAGGTTTGGA
CATCACATTTCACAGTCAGAAGGACAGCGAACTAAAGAAGAAATGGTCAACACAAAAGCTGTTGACCAAG
GTATCAGCAACACAAGCCTTCTAAACTCAAGGATTTAA

Translation (385 aa):
MSLILNILREMLEYFGVPVEQVLLIWENKDYGSTRSIVRIIGKMLPLEPCRRPNFELIPLLNSVDSDNCG
SMVPSFADILYVANDEEASYLRFRNSIWKNEEEKVEIFHPLRLVRDPLSPAVRQKETVKNDLPVNEAAIR
KIAALENELTFLRSQIAAIVEMQELKNSTNSSSFGLSDERISLGQLSSSRAAHLSVDPDQLPGSVLSPPP
PPPLPPQFSSLQPPCFPPVQPGSNNICDSDNPATEMSKQNPAANKTNYSHHSKSQRNKDIPNMLDVLKDM
NKVKLRAIERSPGGRPIHKRKRQNSHWDPVSLISHALKQKFAFQEDDSFEKENRSWESSPFSSPETSRFG
HHISQSEGQRTKEEMVNTKAVDQGISNTSLLNSRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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