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Report for CCDS51718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51718.1 Public Mus musculus 6 Sgce 23 108 98 CCDS HistoryNCBI Gene:20392Re-query CCDS DB by CCDS ID:51718.1Re-query CCDS DB by GeneID:20392See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51718.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115577.8 ENSMUSP00000111240.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115577.8Link to Ensembl Protein Viewer:ENSMUSP00000111240.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115577Re-query CCDS DB by Protein ID:ENSMUSP00000111240
Original member NCBI NM_001130188.1 NP_001123660.1 Updated not alive Link to Nucleotide Sequence:NM_001130188.1Link to Protein Sequence:NP_001123660.1Re-query CCDS DB by Nucleotide ID:NM_001130188Re-query CCDS DB by Protein ID:NP_001123660
Current member NCBI NM_001130188.2 NP_001123660.1 Accepted alive Link to Nucleotide Sequence:NM_001130188.2Link to Protein Sequence:NP_001123660.1Re-query CCDS DB by Nucleotide ID:NM_001130188Re-query CCDS DB by Protein ID:NP_001123660Link to BLAST:NP_001123660.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123660.1 473 O70258-2 473 100% 0 0

Chromosomal Locations for CCDS 51718.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 4674616 4674632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4678067 4678110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4689579 4689767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4690469 4690495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4691429 4691640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4694022 4694184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4707074 4707272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4711308 4711380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4717921 4718078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4719374 4719496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4730006 4730113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4746980 4747088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGCTATTATTCTGGTGGTGGGAGCTGGGAGACCCTTGTGCTTGGACGGGAAAGGGTCGGGGGACACTCA
AGATGAGCCCCGCGACCACTGGCACATTCTTACTGACAGCTTTTTTATTAAGCTGTGCCGATGGCATAAA
TGGAACAGTTAACTGGAAGACCAAACAAGCCAGCAGTTTTAGTATCAGCAGGAAACTGGCTGCTGGGAAG
AAAGATGTGTACACTCTTTTCTCCAAGGTGCACTCTGACCGGAACGTGTACCCATCTGCAGGTGTCCTCT
TTGTTCATGTGTTGGAGAGAGAGTATTTTAAGGGTGAATTTCCACCTTATCCAAAGCCTGGGGAGGTTAG
TAATGATCCCATAACATTTAACACAAATTTAATGGGCTACCCAGATAGACCTGGATGGCTTCGATATATC
CAAAGGACCCCGTACAGTGATGGAGTCCTGTATGGGTCTCCAACAGCTGAAAATGTGGGGAAACCAACTA
TTATTGAGATAACTGCCTACAATAGACGTACCTTTGAGACTGCAAGGCATAACTTGATAATTAATATAAT
GTCAGCAGAAGAATTCCCGTTGCCATATCAAGCAGAATTCTTCATCAAAAATATGAATGTGGAAGAAATG
TTGGCCAGCGAGGTTCTTGGAGACTTTCTCGGGGCTGTAAAAAATGTGTGGCAGCCAGAGCGCCTCAACG
CCATAAACATCACGTCAGCCCTGGATAGGGGTGGCAGAGTGCCGCTTCCTATTAATGACATGAAGGAGGG
TGTTTATGTCATGGTTGGTGCCGATGTTGCATTTTCTTCTTGTTTACGAGAAGTTGAAAATCCACAGAAT
CAGTTAAGATGCAGTCAAGAAATGGAGCCTGTGATAACATGCGACAAAAAGTTCCGAACTCACTTTCATA
TCGACTGGTGCAAGATTTCACTGGTTGACAAAACAAAGCAAGTGTCCACCTATCAGGAAGTAGTTCGTGG
CGAGGGCATTTTGCCCGACGGCGGGGAGTACAAGCCCCCTTCGGATTCTTTGAAAAGCCGAGACTATTAC
ACGGATTTCCTCGTTACCCTGGCTGTGCCCTCGGCGGTAGCACTGGTGCTTTTCCTAATACTCGCTTATA
TCATGTGCTGCCGACGGGAAGGAGTGGAAAAGAGAGACATGCAAACCCCAGATATCCAGCTTGTCCATCA
CAGCTCGATTCAGAAATCTACCAAGGAGCTTCGAGACATGTCCAAAAACAGAGAGATTGCATGGCCCCTG
TCTACCCTGCCCGTGTTCCACCCTGTAACTGGAGAGGTTATACCTCCCACGCACACAGACAACTACGACA
GCACCAACATGCCGTTGATGCAGGCACAGCAGAACTTGCCACACCAGACTCAGATCCCTCAACCGCAGAC
TACAGGTAAATGGTATCCCTGA

Translation (473 aa):
MLLFWWWELGDPCAWTGKGRGTLKMSPATTGTFLLTAFLLSCADGINGTVNWKTKQASSFSISRKLAAGK
KDVYTLFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPKPGEVSNDPITFNTNLMGYPDRPGWLRYI
QRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEEFPLPYQAEFFIKNMNVEEM
LASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKEGVYVMVGADVAFSSCLREVENPQN
QLRCSQEMEPVITCDKKFRTHFHIDWCKISLVDKTKQVSTYQEVVRGEGILPDGGEYKPPSDSLKSRDYY
TDFLVTLAVPSAVALVLFLILAYIMCCRREGVEKRDMQTPDIQLVHHSSIQKSTKELRDMSKNREIAWPL
STLPVFHPVTGEVIPPTHTDNYDSTNMPLMQAQQNLPHQTQIPQPQTTGKWYP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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