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Report for CCDS51716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51716.1 Public Mus musculus 6 Sgce 23 108 98 CCDS HistoryNCBI Gene:20392Re-query CCDS DB by CCDS ID:51716.1Re-query CCDS DB by GeneID:20392See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51716.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115579.7 ENSMUSP00000111242.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115579.7Link to Ensembl Protein Viewer:ENSMUSP00000111242.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115579Re-query CCDS DB by Protein ID:ENSMUSP00000111242
Original member NCBI NM_011360.3 NP_035490.3 Updated not alive Link to Nucleotide Sequence:NM_011360.3Link to Protein Sequence:NP_035490.3Re-query CCDS DB by Nucleotide ID:NM_011360Re-query CCDS DB by Protein ID:NP_035490
Current member NCBI NM_011360.4 NP_035490.3 Accepted alive Link to Nucleotide Sequence:NM_011360.4Link to Protein Sequence:NP_035490.3Re-query CCDS DB by Nucleotide ID:NM_011360Re-query CCDS DB by Protein ID:NP_035490Link to BLAST:NP_035490.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035490.3 437 O70258-1 437 100% 0 0

Chromosomal Locations for CCDS 51716.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 4674616 4674632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4678067 4678110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4689579 4689767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4690469 4690495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4691429 4691640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4694022 4694184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4707074 4707272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4711308 4711380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4717921 4718078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4719374 4719496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4746980 4747088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGCTATTATTCTGGTGGTGGGAGCTGGGAGACCCTTGTGCTTGGACGGGAAAGGGTCGGGGGACACTCA
AG
ATGAGCCCCGCGACCACTGGCACATTCTTACTGACAGTGTACACTCTTTTCTCCAAGGTGCACTCTGA
C
CGGAACGTGTACCCATCTGCAGGTGTCCTCTTTGTTCATGTGTTGGAGAGAGAGTATTTTAAGGGTGAA
TTT
CCACCTTATCCAAAGCCTGGGGAGGTTAGTAATGATCCCATAACATTTAACACAAATTTAATGGGCT
AC
CCAGATAGACCTGGATGGCTTCGATATATCCAAAGGACCCCGTACAGTGATGGAGTCCTGTATGGGTC
T
CCAACAGCTGAAAATGTGGGGAAACCAACTATTATTGAGATAACTGCCTACAATAGACGTACCTTTGAG
ACT
GCAAGGCATAACTTGATAATTAATATAATGTCAGCAGAAGAATTCCCGTTGCCATATCAAGCAGAAT
TC
TTCATCAAAAATATGAATGTGGAAGAAATGTTGGCCAGCGAGGTTCTTGGAGACTTTCTCGGGGCTGT
A
AAAAATGTGTGGCAGCCAGAGCGCCTCAACGCCATAAACATCACGTCAGCCCTGGATAGGGGTGGCAGA
GTG
CCGCTTCCTATTAATGACATGAAGGAGGGTGTTTATGTCATGGTTGGTGCCGATGTTGCATTTTCTT
CT
TGTTTACGAGAAGTTGAAAATCCACAGAATCAGTTAAGATGCAGTCAAGAAATGGAGCCTGTGATAAC
A
TGCGACAAAAAGTTCCGAACTCACTTTCATATCGACTGGTGCAAGATTTCACTGGTTGACAAAACAAAG
CAA
GTGTCCACCTATCAGGAAGTAGTTCGTGGCGAGGGCATTTTGCCCGACGGCGGGGAGTACAAGCCCC
CT
TCGGATTCTTTGAAAAGCCGAGACTATTACACGGATTTCCTCGTTACCCTGGCTGTGCCCTCGGCGGT
A
GCACTGGTGCTTTTCCTAATACTCGCTTATATCATGTGCTGCCGACGGGAAGGAGTGGAAAAGAGAGAC
ATG
CAAACCCCAGATATCCAGCTTGTCCATCACAGCTCGATTCAGAAATCTACCAAGGAGCTTCGAGACA
TG
TCCAAAAACAGAGAGATTGCATGGCCCCTGTCTACCCTGCCCGTGTTCCACCCTGTAACTGGAGAGGT
T
ATACCTCCCACGCACACAGACAACTACGACAGCACCAACATGCCGTTGATGCAGGCACAGCAGAACTTG
CCA
CACCAGACTCAGATCCCTCAACCGCAGACTACAGGTAAATGGTATCCCTGA


Translation (437 aa):
MLLFWWWELGDPCAWTGKGRGTLKMSPATTGTFLLTVYTLFSKVHSDRNVYPSAGVLFVHVLEREYFKGE
F
PPYPKP
GEVSNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFE
T
ARHNLIINIMSAE
EFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGR
V
PLPINDMKE
GVYVMVGADVAFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTHFHIDWCKISLVDKTK
Q
VSTYQEVVRGEGILPDGGEYKPPSDSLKSRDYYTDFLVTLAVPSAVALVLFLILAYIMCCRREG
VEKRD
M
QTP
DIQLVHHSSIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEVIPPTHTDNYDSTNMPLMQAQQNL
P
HQTQIPQPQTT
GKWYP



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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