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Report for CCDS51714.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51714.1 Public Mus musculus 6 Vps50 23 108 98 CCDS HistoryNCBI Gene:73288Re-query CCDS DB by CCDS ID:51714.1Re-query CCDS DB by GeneID:73288See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51714.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170873.9 ENSMUSP00000128323.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170873.9Link to Ensembl Protein Viewer:ENSMUSP00000128323.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170873Re-query CCDS DB by Protein ID:ENSMUSP00000128323
Original member Current member NCBI NM_001167751.1 NP_001161223.1 Accepted alive Link to Nucleotide Sequence:NM_001167751.1Link to Protein Sequence:NP_001161223.1Re-query CCDS DB by Nucleotide ID:NM_001167751Re-query CCDS DB by Protein ID:NP_001161223Link to BLAST:NP_001161223.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161223.1 938 Q8CI71-3 938 100% 0 0

Chromosomal Locations for CCDS 51714.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 3498523 3498555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3504869 3504937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3516622 3516744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3517789 3517860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3519217 3519270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3520207 3520277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3522256 3522373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3522683 3522718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3524093 3524175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3532158 3532200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3533472 3533570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3536832 3536972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3545510 3545642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3551013 3551104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3554996 3555090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3555368 3555466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3562268 3562358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3565516 3565692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3567735 3567853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3571002 3571108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3578794 3578915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3588006 3588086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3592427 3592575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3594018 3594114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3594743 3594901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3598472 3598593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3600128 3600359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2817 nt):
ATGCAAAAAATCAAATCTCTCATGACCCGGCAGGGTCTGAAGAGCCCTCCGGAGAGCCTCAATGATCTTG
GTGCCTTTGAGAGCCTTCGGGTCCCTGGAAAGGAGGAATTCAGGGAGCTTCGAGAACAGCCAAGCGACCC
TCAAGCTGAGCAAGAGTTGATTAATAGCATTGAACAAGTCTATTTTTCTGCGGATCCATTTGATATTGTT
AAATATGAGCTGGAGAAGCTTCCTCCTGTTCTCAATCTGCAAGAGTTAGAGGAGTACAGAGACAAATTAA
AGCAACAACAATCTGCAGTCTCTAAAAAAGTGGCAGATTTGATTCTTGAAAAGCAGCCTGCTTATGTAAA
GGAACTTGAAAGAGTCACATCACTGCAGACAGGTCTTCAGTTGGCTGCTGTCATCTGCACAAATGGGAGG
AGGCACTTGAATATTGCAAAGGAAGGTTTTACTCAGGCTAGCTTAGGCCTTCTTGCAAATCAAAGGAAGC
GTCAGTTGCTAATTGGACTTCTGAAGTCGCTGAGAACCATAAAAACATTGCAAAGAACTGACATACGCTT
AAGTGAAATGCTGGAGGAAGAGGACTATCCAGGAGCTATTCAGCTGTGCCTAGAATGTCAGAAGGCTGCC
AGCACTTTTAAACACTACAGCTGTATAAGTGAGCTGAATTCAAAGCTGCAAGATACTTTGGAGCAAATTG
AGGAACAGTTGGATGTAGCTCTTTCCAAAATCTGCAAGAATTTTGACATTAACCATTATACCAAGGTTCA
GCAAGCTTACCGGCTTCTTGGAAAAACACAGACTGCGATGGATCAGCTTCATATGCACTTCACTCAAGCC
ATTCACAACACCGTATTTCAGGTTGTGCTTGGCTATGTGGAGCTGTGTGCAGGAAACACGGATACAAAAT
TCCAGAAGCTTCAGTATAAAGATCTCTGTACGCATGTGACACCAGACAGCTATATTCCATGCCTGGCAGA
CCTGTGCAAAGCACTGTGGGAAGTCATGCTCAGCTACTACAGAACCATGGAGTGGCACGAGAAACATGAC
AATGAGGAAACAGCTGCAGCTGCTGAAGGAAGCAATGTGATGAGTACTGAGGAGGCCACTTTTGACCGTG
GCTATGTAAAGAAGAAGTTAGAGCACGGCCTTACCCGGATATGGCAGGATGTTCAACTAAAAGTAAAAAC
CTACTTGCTTGGAACTGATTTATCTATATTCAAATATGATGATTTCATCTTTGTTCTGGATATTGTCAGC
AGGTTGATGCAAGTTGGAGAAGAATTTTGTGGTAGCAAGTCTGAAGTTTTGCAGGAGTCCATTAGAAAAC
AAAGTGTCAATTACTTCAAGAACCACCATAGGATACGACTTGATGAACTGAGAATGTTCTTAGAGAATGA
GACATGGGAGCTTTGCCCTGTTAAGTCAAATTTTAGCATCTTGCAGCTTCATGAGTTTAAATTCCTGGAA
CAGTCTCGCTCCCCATCAGTTTCACCTAGTAAGCAGCCATCAGCAACTTCTTCAAAGCCTGTGACTTTGT
TTGAGCAGTACTGCAGTGGTGGGAATCCATTTGAAATACAAGCCGACCACAAAGATGAAGAAACTGAAGA
TGTCTTAGCCTCTAATGGGTATGAGTCTGATGAGCAAGAGAAGAGCGCCTATCAGGACTATGACAGTGAC
AGCGACGTCCCTGAGGAGCTGAAGCGGGATTACGTGGACGAGCAGACCGGCGACGTGCCCGTGAAGAGTG
TTTCCCGAGAGACCCTGAAGAGCAGGAAGAAGTCGGATTACAGTCTAAACAAAGTGAATGCACCCATCTT
AACAAACACAACACTGAATGTAATAAGGCTTGTTGGAAAGTACATGCAGATGATGAACATCCTTAAGCCA
ATCGCCTTCGATGTGATCCATTTCATGTCTCAGCTCTTTGACTATTACTTGTATGCCATATATACCTTTT
TTGGTCGGAATGATTCATTGGAATCAACAGGACTTGGCCTTAGTAGTAGCAGACTAAAAACAACTCTAAA
CAGAATTCAAGAAAGCCTTATTGACCTGGAGGGCTCAGCTGATCCAACTGCCACTCTCACAGCAGCCGAG
GAAAGAAAGGAGAAGGTACCCAGCCCACACCTCAATCAGCTAGTGATTTTGACATCTGGGGATACATTGT
ATGGGTTGGCAGAGAGAGTGGTAGCCACAGAATCCTTAGTGTTCTTGGCTGAGCAGTTTGAGTTCCTTCA
GCCACATTTGGATGCTGTGATGCCTGCAGTCAAAAAGCCCTTCCTGCAGCAGTTTTACTCCCAGACAGTC
TCAACTGCCAGTGAACTGCGCAAGCCCATTTACTGGATTGTGGCTGGTAAAGCTATTGATTATGAACAGA
TGCTTCTCCTAATGATGAATGTGAAGTGGGATGTCAAAGAGATCATGTCACAGCACAACATCTATGTAGA
TGCATTGCTGAAGGAATTTGAGCAGTTTAACAAGCGGTTAAATGAAGTTTCTAAGAGAGTTCGGATACCT
CTGCCTGTATCAAATATACTTTGGGAGCATTGTATACGATTAGCTAACAGAACTATTGTGGAAGGATACG
CCAATGTCAAGAAATGCAGTAATGAGGGGCGTGCCTTGATGCAATTGGATTTTCAACAGTTTTTAATGAA
ACTCGAAAAACTAACTGACATTAGACCTATTCCTGATAAAGAATTTGTGGAAACGTATATCAAAGCCTAC
TACCTAACTGAGAATGACATGGAGCGTTGGATCAAAGAGCACAGGGTAAGAACACGGGTTGGTGTGCTGA
TCTTGTCTGGGGTGTAA

Translation (938 aa):
MQKIKSLMTRQGLKSPPESLNDLGAFESLRVPGKEEFRELREQPSDPQAEQELINSIEQVYFSADPFDIV
KYELEKLPPVLNLQELEEYRDKLKQQQSAVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGR
RHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDIRLSEMLEEEDYPGAIQLCLECQKAA
STFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQA
IHNTVFQVVLGYVELCAGNTDTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHD
NEETAAAAEGSNVMSTEEATFDRGYVKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIVS
RLMQVGEEFCGSKSEVLQESIRKQSVNYFKNHHRIRLDELRMFLENETWELCPVKSNFSILQLHEFKFLE
QSRSPSVSPSKQPSATSSKPVTLFEQYCSGGNPFEIQADHKDEETEDVLASNGYESDEQEKSAYQDYDSD
SDVPEELKRDYVDEQTGDVPVKSVSRETLKSRKKSDYSLNKVNAPILTNTTLNVIRLVGKYMQMMNILKP
IAFDVIHFMSQLFDYYLYAIYTFFGRNDSLESTGLGLSSSRLKTTLNRIQESLIDLEGSADPTATLTAAE
ERKEKVPSPHLNQLVILTSGDTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTV
STASELRKPIYWIVAGKAIDYEQMLLLMMNVKWDVKEIMSQHNIYVDALLKEFEQFNKRLNEVSKRVRIP
LPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDKEFVETYIKAY
YLTENDMERWIKEHRVRTRVGVLILSGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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