NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51704.1 Public Mus musculus 5 Uspl1 23 108 98 CCDS HistoryNCBI Gene:231915Re-query CCDS DB by CCDS ID:51704.1Re-query CCDS DB by GeneID:231915See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51704.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050472.15 ENSMUSP00000050172.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050472.15Link to Ensembl Protein Viewer:ENSMUSP00000050172.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000050472Re-query CCDS DB by Protein ID:ENSMUSP00000050172
Original member Current member EBI ENSMUST00000122160.7 ENSMUSP00000113247.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122160.7Link to Ensembl Protein Viewer:ENSMUSP00000113247.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122160Re-query CCDS DB by Protein ID:ENSMUSP00000113247
Original member Current member NCBI NM_001115149.1 NP_001108621.1 Accepted alive Link to Nucleotide Sequence:NM_001115149.1Link to Protein Sequence:NP_001108621.1Re-query CCDS DB by Nucleotide ID:NM_001115149Re-query CCDS DB by Protein ID:NP_001108621Link to BLAST:NP_001108621.1
Original member Current member NCBI NM_001115153.1 NP_001108625.1 Accepted alive Link to Nucleotide Sequence:NM_001115153.1Link to Protein Sequence:NP_001108625.1Re-query CCDS DB by Nucleotide ID:NM_001115153Re-query CCDS DB by Protein ID:NP_001108625Link to BLAST:NP_001108625.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108621.1 1089 Q3ULM6-1 1089 99.9082% 0 1
NP_001108625.1 1089 Q3ULM6-1 1089 99.9082% 0 1

Chromosomal Locations for CCDS 51704.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 149187775 149187876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149188345 149188473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149193840 149194440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149198645 149198758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149201760 149201889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149204269 149204394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149209643 149209800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149213352 149215261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3270 nt):
ATGACGGATGATTCTCTGAAGATTGGAAATGGTTTGCCACTGGTTGGACCAGGGACTGATGTAGGGATAT
CTTCACTCCCCATGCTGGGGTACTTGGGAAAAAATTATGCTTCAGCTAAAGTCACAACAGACGGGCATTG
CCCTGCTTGTAGAGCGAAAGGCAAGCTAAGTGCCTTAAAACCTTACCGCATTAGCTTCCAAGAATCTGTC
TTTCTGTGTGAGGATCTTCAGTGCATTTATCCTTTGGGCTCTGAGTCACTTACTAATTTAATTTCTCCTG
ATTCAGAAGATTGTCCCACTCCAAGTAAGCCTCAAAAACGAAAAAGATTGGAAACCAACTGTAGGAATTC
ACCTCTTCCAGTACATTCTAAAAAGACTAGAAGTCACATTGTCACTGATAGTGAACCAATTGTGAATGGT
AAATATAATGGAGAAGTGTGTGATGACTTCTCAGCAAGCTTCCCAGATACCAGTGCTCACCAGGATCCTG
CCAGCACAGCTGCTTCTGTGGAGCAGAGTGAGGCTTTGGAGGCTGATGATGTGGTTGTGGCCGCTACAGA
AGATCCTGCTACAGTTAGTGTCACATCTGAGCTGGAAATGCCAGCTAAGAGCAGATGTTTACCACTTTGC
CAGACTCTGTGTGTCCAGTGGAAAAACACCCAGGCCCTGTGCTGGTTAGACTGTATCCTGTCAGCCCTGG
TGCACTTGGAGGTGTTGAGGAAGACTGTGCTGGAGGCGTGCTCCAGGGAGGAGTGTGTATTTGGAAGGCT
GTTTGAAATGTACCACCAAGCAGATGAGCTGCTGCACACCCATCACCTGCATGGCGTCACAGGTGAAGAT
TGTAAAAAATTGACATCAGAAATATTTACAGAAATAGATACCTGTTTGAATAAAGTTAGAGATGAAATTT
TTGCTAAACTTCAACCGAAGCTTAGATGCACATTAGGTGACATGGAAAGTCCTGTGTTTGCACTTCCTGT
ACTGTTAAAGCTTGAACCCCATGTTGAAAGCCTCTTTACATATTCTTTTTCTTGGAATTTTGAATGTTCC
CATTGTGGACACCAGTACCAAAACAGGTGTGTGAAGAGTCTGGTCACCTTTACCAATATTGTTCCTGAGT
GGCATCCACTCAATGCTGCCCATTTTGGTCCATGTAACAGCTGCAACAGTAAATCACAAATAAGAAAAAT
GGTGTTGGAAAGAGCGTCGCCCATACTCATGCTGCACTTCGTGGAGGGCTTACCAAGGAGGGATTTGCAA
CACTATGCCTTCCACTTTGAAGGAAGCCTTTATCAAGTCACGTCGGTAATACAGTACCAAGCAAATAACC
ATTTTATAACATGGTTTTTAGATGCTGATGGGAGTTGGCTGGAGTGTGATGACCTAAAGGGTCCCTGTGC
TAAAAGGCACGTGACCTGTGAAGTGCCAGCTTCAGAGACACATATCGTTATTTGGGAAAGAAAATCCCAG
GTGCCAATTGAAGAAGCTGCCTGCCTTCCATGCATGAAGCCAAATGTGCAGCCTGTATCAGGTGAGGAGC
AGCCGACTTGTCCAGCACTGTGTTCTCTGGCTGGGACCGCCACCTCAGAACCCTCAGTCGCCCATCCCAC
ATCTATGGCAGGCGCTCCTCAGACTCTTCCAGAAATCCAAGCTGTAGCTCATGGAGATAGTGTACTTTCA
GGAGCAAAAGGCATGGTCGACAGCATTTTACCCTCAGCACTTGAAGAAACCATCCAGGAAACTGCCTCTG
TTTCTCAGGTTGACTCCAAAGATTGCCTGTTGGAAGACAAACCCGTGGCAGGAAGTGCAGCACTGGTCAG
AGTACTTGCTTTTCAGCCACAGGACTCCCCGGGGTCTTCGGGGTCTTCCTTAGTGTCCAGCCTGTGTGAA
GGAAAGCTAGTTGCCCCATGTGTGGATTCAAGTTTCCCATCCCAAGCTGTGAGCACAGACCTGCAGGCAG
TACTGTCCCAGGCAGGGGACACTGTGGTTCCTAACCCTGTGACTGATGCCCCTGTTCCTGTTCTTGTTCA
GGAATTGAAGTCCCTGGCAACTGAGAAGGACTCTCAGACACAGTTGCTGCCACTGAAAACTGAGAAGTTA
GATCCTGAGCAACCTGGTAAATCTCAGGCATCTAATTTGAGAAAACGAGAAACCACAGCGTCTTCTAAAA
CAGTAGCAGCCAGGTCAGCACAGAATCAGCCTCGGAAAGAAGATCAGAAGAGAGCCTTCGTGGGAAGTTG
GGTGAAGGGGCTATTGAGCAGGGGTGGTGCTTTTATGCCAACCTGTGTTTTGTCTCAGAGTAGAGCAGTA
AGTGACCTGCAACCTTCTGTTAAAGGAGCCAGTAATTTTGATGGCTTTAAAACGAAAAGTATAAGCCGCA
GGTCTAAAAGAATGTCCAGGAAAGCTAAGCACATGGAGGAACTGTCTCCAAGGAACAGCTCTCCACCATT
GAGCTGGACAGCTGCTCTGACCCAGGCTGCTGAGAACGCCACCTCAGCTCTGTTGAGGGAGCAGGAAGGC
TCACGTCCAGCTCCCCTCAGGCACAGATCTCCTGGCAATGAAAGCGCCATCTCTCCAGCAAGCCGTGGAG
ATGCGGCTGAAGATCAGGTTCATAAGCTTCGGCTCAAACTTCTTAAAAAATTAAAGGCAAAAAAGAAGAA
ACTAGCTGCCCTCATTTCTTCCCCGCACCGTGAACCATCTCTAAGTGACCACTCAGAGCCTGCGTCCCAT
TGTGGAACACCTGCAAGTGACCAGTCAGAGCCTGTATCCCATTGTGGATCTCCAAATGACTGTGAGTCCA
TAGAAGATCTGTTAAAAGAGCTACAGCATCAAATTGACCTTGCAGACAGCAAATCTGGGTGCACCTCTGC
TCCTGATGCCACCTCAAATAACAGCCAGAGTCATGAGGAGATTTTAGCAGAGTTGCTGTCGCCTACAGCC
ATGTCAGAGCCCTCAGAAAGTGGGGAGCTTGAGTTGAGGTACTTGGAAATGGGGGACAGCACCCCAGCAC
AAGCACCTAGTGAATTCAGTGTTGTCTCCCAGAACACATGTCTGAAACAGGACCATGATTACTGCAGCCC
TGAGAAAGGCCAGCGGGAAGTTGATCTGCATTCAGTCATGGACAGTGCCTGTATAAGAACCTTGAACTTG
GGGAGTCCCATGAAGACTGATATCTTTGATGATTTTTTTTCCACCTCAGCACTGAATTCTTTAACAAACG
ACACATTAGACATACCTCATTTTGATGACTCTCTGTTTGAGAATTGCTGA

Translation (1089 aa):
MTDDSLKIGNGLPLVGPGTDVGISSLPMLGYLGKNYASAKVTTDGHCPACRAKGKLSALKPYRISFQESV
FLCEDLQCIYPLGSESLTNLISPDSEDCPTPSKPQKRKRLETNCRNSPLPVHSKKTRSHIVTDSEPIVNG
KYNGEVCDDFSASFPDTSAHQDPASTAASVEQSEALEADDVVVAATEDPATVSVTSELEMPAKSRCLPLC
QTLCVQWKNTQALCWLDCILSALVHLEVLRKTVLEACSREECVFGRLFEMYHQADELLHTHHLHGVTGED
CKKLTSEIFTEIDTCLNKVRDEIFAKLQPKLRCTLGDMESPVFALPVLLKLEPHVESLFTYSFSWNFECS
HCGHQYQNRCVKSLVTFTNIVPEWHPLNAAHFGPCNSCNSKSQIRKMVLERASPILMLHFVEGLPRRDLQ
HYAFHFEGSLYQVTSVIQYQANNHFITWFLDADGSWLECDDLKGPCAKRHVTCEVPASETHIVIWERKSQ
VPIEEAACLPCMKPNVQPVSGEEQPTCPALCSLAGTATSEPSVAHPTSMAGAPQTLPEIQAVAHGDSVLS
GAKGMVDSILPSALEETIQETASVSQVDSKDCLLEDKPVAGSAALVRVLAFQPQDSPGSSGSSLVSSLCE
GKLVAPCVDSSFPSQAVSTDLQAVLSQAGDTVVPNPVTDAPVPVLVQELKSLATEKDSQTQLLPLKTEKL
DPEQPGKSQASNLRKRETTASSKTVAARSAQNQPRKEDQKRAFVGSWVKGLLSRGGAFMPTCVLSQSRAV
SDLQPSVKGASNFDGFKTKSISRRSKRMSRKAKHMEELSPRNSSPPLSWTAALTQAAENATSALLREQEG
SRPAPLRHRSPGNESAISPASRGDAAEDQVHKLRLKLLKKLKAKKKKLAALISSPHREPSLSDHSEPASH
CGTPASDQSEPVSHCGSPNDCESIEDLLKELQHQIDLADSKSGCTSAPDATSNNSQSHEEILAELLSPTA
MSEPSESGELELRYLEMGDSTPAQAPSEFSVVSQNTCLKQDHDYCSPEKGQREVDLHSVMDSACIRTLNL
GSPMKTDIFDDFFSTSALNSLTNDTLDIPHFDDSLFENC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH