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Report for CCDS51647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51647.1 Public Mus musculus 5 Mtrfr 23 108 98 CCDS HistoryNCBI Gene:72650Re-query CCDS DB by CCDS ID:51647.1Re-query CCDS DB by GeneID:72650See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51647.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077376.2 ENSMUSP00000076594.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077376.2Link to Ensembl Protein Viewer:ENSMUSP00000076594.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000077376Re-query CCDS DB by Protein ID:ENSMUSP00000076594
Original member Current member NCBI NM_001134717.2 NP_001128189.1 Accepted alive Link to Nucleotide Sequence:NM_001134717.2Link to Protein Sequence:NP_001128189.1Re-query CCDS DB by Nucleotide ID:NM_001134717Re-query CCDS DB by Protein ID:NP_001128189Link to BLAST:NP_001128189.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128189.1 184 Q80VP5-1 184 100% 0 0

Chromosomal Locations for CCDS 51647.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124338645 124338935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124340609 124340872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGTCTTCTAGGAGCACCTGGGCTCTGCTCCGCCTCCCTCTACCACTGATCAGGATATGCTCTGGGAAGT
GGGGGCTCAGGCTTCAGGAGAAGCCAGCACTGCTCTTCCCAGGAATGGCTGCCAGCACAGTACAGGTGGC
AGGCAGGAAGGACTACCCTGCTCTGCTCCCCCTGAATGAGAGTGAGCTCGAAGAACAGTTCGTGAAAGGA
CATGGCCCAGGGGGCCAGGCCACCAACAAGACCAGCAATTGTGTAGTGCTCAAACACGTGCCCTCCGGCA
TTGTGGTCAAGTGCCACCAAACAAGATCTGTGGATCAAAACAGGAAGATAGCTCGGAAAGTCCTCCAGGA
GAAAGTGGATGTTTTCTACAATGGTGAAAACAGCCCCGTTCACAAAGAGAAGCTCGAGGCTGAGAGGAGA
AAGCGAGAGAGGAAGAAAAGAGCAAAGGAGACTCTAGAAAAGAAAAAATTATTGAAAGAATTACGGGAAG
CAAGTCAAAACATCACAGAGAAAAAGGCTGATGCTGATGGTATACCAAGGGGCTTCCAGGAATAG

Translation (184 aa):
MSSRSTWALLRLPLPLIRICSGKWGLRLQEKPALLFPGMAASTVQVAGRKDYPALLPLNESELEEQFVKG
HGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKVDVFYNGENSPVHKEKLEAERR
KRERKKRAKETLEKKKLLKELREASQNITEKKADADGIPRGFQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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