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Report for CCDS51637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51637.1 Public Mus musculus 5 Ptpn11 23 108 98 CCDS HistoryNCBI Gene:19247Re-query CCDS DB by CCDS ID:51637.1Re-query CCDS DB by GeneID:19247See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51637.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100770.8 ENSMUSP00000098333.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100770.8Link to Ensembl Protein Viewer:ENSMUSP00000098333.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100770Re-query CCDS DB by Protein ID:ENSMUSP00000098333
Original member Current member NCBI NM_001109992.1 NP_001103462.1 Accepted alive Link to Nucleotide Sequence:NM_001109992.1Link to Protein Sequence:NP_001103462.1Re-query CCDS DB by Nucleotide ID:NM_001109992Re-query CCDS DB by Protein ID:NP_001103462Link to BLAST:NP_001103462.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103462.1 593 P35235-2 593 100% 0 0

Chromosomal Locations for CCDS 51637.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 121134757 121134826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121137417 121137529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121143003 121143154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121143562 121143629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121144530 121144684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121149103 121149234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121152212 121152370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121152475 121152554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121154430 121154526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121162709 121162822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121163138 121163254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121164495 121164687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121167849 121168043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121171981 121172103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121191202 121191215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGACATCGCGGAGATGGTTTCACCCCAACATCACTGGTGTGGAGGCAGAGAATCTCCTGCTGACCAGAG
GAGTCGATGGCAGTTTTTTAGCAAGGCCCAGTAAGAGTAACCCTGGAGACTTCACTCTGTCTGTTAGAAG
AAATGGAGCTGTTACCCACATCAAGATTCAGAACACTGGGGACTACTATGACCTCTATGGTGGGGAGAAG
TTTGCCACTTTGGCTGAACTGGTTCAGTATTACATGGAACACCATGGGCAGCTGAAAGAGAAGAATGGAG
ATGTTATCGAGCTCAAGTACCCGCTGAACTGTGCAGACCCTACCTCTGAAAGGTGGTTCCATGGTCACTT
GTCTGGAAAAGAAGCAGAGAAGCTGCTGACGGAGAAGGGCAAGCATGGCAGCTTCCTCGTTCGAGAGAGC
CAGAGCCACCCCGGAGACTTCGTTCTCTCCGTGCGCACTGGTGACGACAAAGGGGAGAGCAACGACGGCA
AGTCCAAAGTGACCCACGTCATGATCCGCTGTCAGGAGCTGAAATACGACGTTGGTGGGGGAGAGCGCTT
TGACTCTCTGACAGACCTGGTGGAGCATTACAAGAAGAACCCCATGGTGGAGACGCTGGGCACAGTCCTG
CAGCTCAAGCAGCCCCTCAACACAACTCGTATCAATGCTGCTGAAATTGAAAGCCGGGTTCGAGAGTTAA
GCAAGCTGGCTGAGACCACAGATAAAGTCAAGCAGGGCTTTTGGGAAGAGTTTGAGACGCTCCAGCAACA
GGAATGCAAACTTCTCTATAGCCGAAAAGAAGGACAGAGACAAGAAAATAAAAACAAAAACAGATACAAA
AACATCCTGCCCTTTGATCATACCAGGGTCGTTCTGCATGATGGGGATCCCAATGAGCCTGTTTCTGATT
ACATTAATGCAAACATCATCATGCCTGAGTTTGAGACCAAGTGCAACAATTCCAAACCCAAAAAGAGTTA
CATTGCCACTCAAGGCTGCCTGCAGAACACGGTGAATGACTTCTGGCGGATGGTGTTCCAGGAGAACTCT
CGAGTCATTGTCATGACCACAAAGGAAGTGGAGAGAGGGAAGAGCAAATGTGTCAAGTACTGGCCTGATG
AGTATGCGCTCAAAGAATACGGGGTCATGCGTGTTAGGAACGTCAAAGAAAGTGCCGCCCATGACTACAC
TTTACGAGAGCTCAAACTCTCTAAGGTCGGACAAGGAAACACAGAGAGAACCGTCTGGCAGTACCACTTT
CGGACCTGGCCAGACCATGGCGTGCCTAGTGACCCTGGAGGTGTGCTGGACTTCCTGGAGGAGGTCCACC
ACAAGCAGGAGAGCATCGTGGATGCAGGCCCTGTCGTGGTTCACTGCAGCGCTGGGATTGGCCGGACAGG
AACCTTCATTGTGATTGACATCCTTATTGACATCATTCGAGAGAAAGGTGTGGACTGTGACATCGACGTT
CCTAAAACCATTCAGATGGTGCGGTCCCAGAGGTCGGGGATGGTCCAGACAGAAGCACAGTACCGGTTTA
TCTACATGGCTGTCCAGCACTACATAGAGACGCTGCAGCGCCGGATCGAGGAGGAGCAGAAAAGCAAAAG
AAAAGGACATGAATATACCAATATTAAGTATTCCTTGGTGGACCAGACAAGTGGTGATCAGAGTCCCCTG
CCACCCTGCACCCCAACGCCACCCTGTGCAGAAATGAGGGAGGACAGCGCCCGAGTCTATGAGAACGTGG
GCCTCATGCAGCAGCAGAGGAGTTTCAGATGA

Translation (593 aa):
MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEK
FATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRES
QSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVL
QLKQPLNTTRINAAEIESRVRELSKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYK
NILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENS
RVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHF
RTWPDHGVPSDPGGVLDFLEEVHHKQESIVDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDV
PKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETLQRRIEEEQKSKRKGHEYTNIKYSLVDQTSGDQSPL
PPCTPTPPCAEMREDSARVYENVGLMQQQRSFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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