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Report for CCDS51610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51610.1 Public Mus musculus 5 Galnt9 23 108 98 CCDS HistoryNCBI Gene:231605Re-query CCDS DB by CCDS ID:51610.1Re-query CCDS DB by GeneID:231605See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51610.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040001.13 ENSMUSP00000038633.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040001.13Link to Ensembl Protein Viewer:ENSMUSP00000038633.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040001Re-query CCDS DB by Protein ID:ENSMUSP00000038633
Original member NCBI NM_198306.3 NP_938048.2 Updated not alive Link to Nucleotide Sequence:NM_198306.3Link to Protein Sequence:NP_938048.2Re-query CCDS DB by Nucleotide ID:NM_198306Re-query CCDS DB by Protein ID:NP_938048
Current member NCBI NM_198306.4 NP_938048.2 Accepted alive Link to Nucleotide Sequence:NM_198306.4Link to Protein Sequence:NP_938048.2Re-query CCDS DB by Nucleotide ID:NM_198306Re-query CCDS DB by Protein ID:NP_938048Link to BLAST:NP_938048.2

Chromosomal Locations for CCDS 51610.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 110544702 110544942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110577440 110577620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110588242 110588408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110589769 110589943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110596066 110596263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110602581 110602698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110614078 110614263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110615397 110615534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110617838 110617933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110619165 110619332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110620508 110620654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGGCGGTGGCCAGGAAGATCAAAACTTTGCTGACGGTCAACATCCTGGTGTTCGTGGGCATCATTCTCT
TCTCGGTGTACTGCCGCCTGCAGGACCGTTCTGAGGCGCTGGTGCAGGTCGTGCGAGGCACCGACCGCCG
GATGCGCAATCGGCTATCCAAGGCGAGTGCTCTGGCCGACCGTGAGGCCATCCTACAGCGCCTGGACCAT
CTGGAGGAGGTGGTCTACAACCAGCTGAATGGCCTTGCAAAGCCCATTGGGCTGGTGGAGGGGCCAGGTG
GCCTGGGCCAGGGAGGAGTGGCTGCCACTCTGCAAGATGACAGCCAAGAGACCGAGGGCAAGTTCGAGGA
CTTTGGGTACAATGCGCAGCTCAGTGACCGCATCTCCCTGGATAGGACCATCCCTGACTACAGGCCCAAG
AGGTGCAGACAGATAACGTATTCTGAAGACCTGCCCCAGATCTCCGTGGTCTTCATCTTTGTCAACGAGG
CACTTTCAGTCATCCTTCGTTCTGTGCACAGTGTGGTCAACCACACACCCTCCCAGCTCCTGAAGGAAGT
CATCCTGGTGGATGATAACAGCGACAACGTGGAACTCAAGTTCAATCTGGACCAGTATGTTCACAAAAGG
TACCCAGGCCTCGTGAAGGTTGTGCGCAACAGCCGTCGGGAAGGTCTGATCCGTGCCCGGCTGCAGGGAT
GGAAGGTGGCCACGGCTCCCATCGTTGGCTTCTTTGATGCCCACGTGGAGTTCAACACTGGCTGGGCTGA
GCCCGCCCTCGCACGGATCCAGGAGGACCGCCGGCGCATCATCCTGCCAGCCATCGACAACATCAAGTAC
AGCACGTTTGAGGTACAGCAGTACGCCAGCGCCGCCCACGGCTACAACTGGGGCCTGTGGTGCATGTATA
TCATCCCTCCGCAGGACTGGCTGGACCGAGGTGACGAGTCAGCGCCCATCAGGACACCTGCCATGATTGG
CTGCTCATTTGTGGTGGACCGGGAGTACTTCGGGGACATTGGCCTGCTGGACCCAGGCATGGAGGTGTAC
GGTGCAGAGAACATTGAACTAGGGATGCGGGTGTGGCAGTGTGGTGGCAGCATGGAGGTACTCCCCTGCT
CCCGCGTGGCCCACATTGAGCGTACCAAAAAGCCATATAACAACGACATCGACTACTACGCCAAACGTAA
TGCACTAAGGGCGGCCGAGGTGTGGATGGACGACTTCAAGTCCCACGTGTACATGGCATGGAATATCCCC
ATGACAAACCCAGGAGTAGACTTTGGGGATGTATCCGAGAGGCTGGCCCTGCGCGAGAAGTTAAAATGCC
GAAGCTTTAAGTGGTACCTGGAGAACGTGTACCCCGAGATGAGGATCTACAACAACACCCTCACGTACGG
AGAGGTGAGAAACAGCAAAGCTAGCGGCTACTGCTTGGACCAGGGGGCAGAAGACGATGACCGAGCCATC
CTCTACCCCTGTCATGGCATGTCCTCACAGCTGGTGCGCTACAGTGCCGAAGGTCTCCTGCAGCTGGGAC
CCCTGGGCTCTACCGCCTTTCTGCCCGACTCCAAGTGTCTGGTAGATGACGGCCGGGGACGCATGCCCAC
CCTGAAGAAGTGTGAGGATGTAGCCAGGCCTACGCAGAGGCTATGGGACTTCACCCAGAGCGGCCCCATC
GTGAGCCGAGACACGGGTCGGTGTCTGGAGGTAGAGATGTCTAAAGATGCCAACTTTGGGCTGCGGTTAG
TAGTACAGCGCTGCTCGGGGCAGAAGTGGATGATCCGAAACTGGATCAAACACGCCAGGCACTGA

Translation (604 aa):
MAVARKIKTLLTVNILVFVGIILFSVYCRLQDRSEALVQVVRGTDRRMRNRLSKASALADREAILQRLDH
LEEVVYNQLNGLAKPIGLVEGPGGLGQGGVAATLQDDSQETEGKFEDFGYNAQLSDRISLDRTIPDYRPK
RCRQITYSEDLPQISVVFIFVNEALSVILRSVHSVVNHTPSQLLKEVILVDDNSDNVELKFNLDQYVHKR
YPGLVKVVRNSRREGLIRARLQGWKVATAPIVGFFDAHVEFNTGWAEPALARIQEDRRRIILPAIDNIKY
STFEVQQYASAAHGYNWGLWCMYIIPPQDWLDRGDESAPIRTPAMIGCSFVVDREYFGDIGLLDPGMEVY
GAENIELGMRVWQCGGSMEVLPCSRVAHIERTKKPYNNDIDYYAKRNALRAAEVWMDDFKSHVYMAWNIP
MTNPGVDFGDVSERLALREKLKCRSFKWYLENVYPEMRIYNNTLTYGEVRNSKASGYCLDQGAEDDDRAI
LYPCHGMSSQLVRYSAEGLLQLGPLGSTAFLPDSKCLVDDGRGRMPTLKKCEDVARPTQRLWDFTQSGPI
VSRDTGRCLEVEMSKDANFGLRLVVQRCSGQKWMIRNWIKHARH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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