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Report for CCDS51531.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51531.1 Public Mus musculus 5 Tmprss11a 23 108 98 CCDS HistoryNCBI Gene:194597Re-query CCDS DB by CCDS ID:51531.1Re-query CCDS DB by GeneID:194597See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51531.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101073.2 ENSMUSP00000098634.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101073.2Link to Ensembl Protein Viewer:ENSMUSP00000098634.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101073Re-query CCDS DB by Protein ID:ENSMUSP00000098634
Original member Current member NCBI NM_001033233.2 NP_001028405.1 Accepted alive Link to Nucleotide Sequence:NM_001033233.2Link to Protein Sequence:NP_001028405.1Re-query CCDS DB by Nucleotide ID:NM_001033233Re-query CCDS DB by Protein ID:NP_001028405Link to BLAST:NP_001028405.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028405.1 389 Q3UQ41 389 100% 0 0

Chromosomal Locations for CCDS 51531.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 86411762 86411923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86414477 86414619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86420002 86420261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86422494 86422665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86428558 86428718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86431843 86431910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86444109 86444185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86445763 86445884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86468851 86468855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGAAGTGGCAGGATATGGCACCCACAACAGAGATCTGAAGCAATGGATGGTTACCCTTCTCTCTGCTC
TCTCCCTGATGATGGTGGTAGTGACCATTGGACTTCTGGCTCTCTTCCTCGTGTTCGATATTCAAGTCAA
TAGCAACTCAGGACAAAAGAGCTCAAATCAACTGAAGGACTTACAAGAGACGAATGAAAATTTGGTAGAT
GAAATATTTATAGATTCAGCCTTGAACAATCGCTACATCAAAAACCACGTAGTCGGACTAACACCAGAAG
AGGATGATACAAAAGCAGACATTGTCATGGTGTTCCAGCCTCCCGCTACAGGGCGAAGAACCGTAGGGAA
AAAGACGCACCATAGCATCTTAGATCAGAAGACAAGGAACGCAAGAGCTTTGCCAGCTGATGTCTCACTG
GTTCAAGTTAAAGATTGTGGCAAGCGAGCTATCCCATTAATTGCCAACAGAATAGTGTCTGGAAACCCTG
CAGCTAAGGGTGCCTGGCCGTGGCAAGTTTCCCTTCAGCGAAGCAACATCCATCAGTGTGGGGGCACGTT
GATTGGTAACATGTGGGTCGTCACTGCAGCACACTGTTTTAGAACCAATTCAAACCCTCGCCAATGGACT
CTTAGTTTTGGAACAACAATAAATCCTCCCTTAATGAAAAGAGACGTCAGAAGAATTATTATGCATGAAA
GGTATCGTCCCCCAGCAAGAGACCATGACATTGCTCTAGTGCAGTTTTCTCCCAGAGTCACCTTTTCGGA
TGAAGTGCGCCGAATTTGTTTGCCAGAACCCTCTGCATCTTTCCCACCAAATTCAACTGTCTACATCACA
GGATTCGGAGCACTTTACTATGGCGGGGAATCCCAAAATGAGCTCCGTGAAGCCAGAGTACAAATCATAA
GCAATGACATCTGCAAGAAGCGACACGTGTATGGCAATGAAATAAAACGTGGGATGTTCTGTGCTGGATT
TCTGGAAGGAAATTACGATGCCTGCAGGGGTGATTCTGGGGGACCATTGGTTATAAGAGACAACAAAGAT
ACCTGGTATCTCATTGGAATTGTGAGCTGGGGAGACAACTGTGGTCAAAAGAACAAGCCTGGGGTGTACA
CACAAGTGACTTATTACCGACACTGGATTGCTTCGAAAACGGGTCTCTAA

Translation (389 aa):
MEVAGYGTHNRDLKQWMVTLLSALSLMMVVVTIGLLALFLVFDIQVNSNSGQKSSNQLKDLQETNENLVD
EIFIDSALNNRYIKNHVVGLTPEEDDTKADIVMVFQPPATGRRTVGKKTHHSILDQKTRNARALPADVSL
VQVKDCGKRAIPLIANRIVSGNPAAKGAWPWQVSLQRSNIHQCGGTLIGNMWVVTAAHCFRTNSNPRQWT
LSFGTTINPPLMKRDVRRIIMHERYRPPARDHDIALVQFSPRVTFSDEVRRICLPEPSASFPPNSTVYIT
GFGALYYGGESQNELREARVQIISNDICKKRHVYGNEIKRGMFCAGFLEGNYDACRGDSGGPLVIRDNKD
TWYLIGIVSWGDNCGQKNKPGVYTQVTYYRHWIASKTGL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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