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Report for CCDS51497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51497.1 Public Mus musculus 5 Clrn2 23 108 98 CCDS HistoryNCBI Gene:624224Re-query CCDS DB by CCDS ID:51497.1Re-query CCDS DB by GeneID:624224See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51497.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053250.4 ENSMUSP00000058204.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053250.4Link to Ensembl Protein Viewer:ENSMUSP00000058204.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053250Re-query CCDS DB by Protein ID:ENSMUSP00000058204
Original member NCBI NM_001163317.1 NP_001156789.1 Updated not alive Link to Nucleotide Sequence:NM_001163317.1Link to Protein Sequence:NP_001156789.1Re-query CCDS DB by Nucleotide ID:NM_001163317Re-query CCDS DB by Protein ID:NP_001156789
Current member NCBI NM_001163317.2 NP_001156789.1 Accepted alive Link to Nucleotide Sequence:NM_001163317.2Link to Protein Sequence:NP_001156789.1Re-query CCDS DB by Nucleotide ID:NM_001163317Re-query CCDS DB by Protein ID:NP_001156789Link to BLAST:NP_001156789.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156789.1 232 B2RVW2 232 100% 0 0

Chromosomal Locations for CCDS 51497.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 45453811 45454063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45460042 45460221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45463699 45463964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGCCTGGATGGTTCAAAAAGGTGTGGTACGGGCTGGCATCTCTACTCAGTTTCTCATCCTTCCTTCTGA
TCATCGTCGCTTTGTCTCTGCCTCATTGGCTGAGTGGGAAAATCTTGTGTCAGACTGGAGTGGATTTGGT
CAATGCCACAGACCCAGAACTGGTCAAATTCATCGGGGACATTTACTACGGGCTCTTCCGAGGATGCAAG
GTGCGGCAATGCGGACTTGGGGGACGCCAGTCCCAATTTACAATCTTCCCGCATCTGGTGAAGGAGCTCA
ATGCAGGCCTCCACGTCACAATTCTCTTGCTCCTCTTCCTGGCGTTGGCCCTGGCTCTGGTCAGCATGGG
TTTTGCTATTCTCAACATCATTCAGGTCCCCTACAGAGCAGTCAATGGCCCTGGTGGCATCTGCCTTTGG
AATGTCCTCGCAGGTGGAGTCGTGGCACTAGCCATCGGCAGCTTCATGGCTGCGGTGAAATTTCACGACC
TGACAGAAAGGATCGCCAACTTCCAGGAGAGGCTCTTTCAGTTTGTAGTGGTGGAAGAACAGTATGAAGA
ATCATTTTGGATATGCGTGGCGAGCGCCTCAGCCCACGCAGCAAACTTGGTTGTGGTGGCAATCAGTCAA
ATTCCCCTTCCAGAAATCAAGACTAAAATGGAAGAGGCCACAGTTACCCCGGAGGACATTTTATACTGA

Translation (232 aa):
MPGWFKKVWYGLASLLSFSSFLLIIVALSLPHWLSGKILCQTGVDLVNATDPELVKFIGDIYYGLFRGCK
VRQCGLGGRQSQFTIFPHLVKELNAGLHVTILLLLFLALALALVSMGFAILNIIQVPYRAVNGPGGICLW
NVLAGGVVALAIGSFMAAVKFHDLTERIANFQERLFQFVVVEEQYEESFWICVASASAHAANLVVVAISQ
IPLPEIKTKMEEATVTPEDILY


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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