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Report for CCDS51414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51414.1 Public Mus musculus 5 Speer1m 23 108 98 CCDS HistoryNCBI Gene:545732Re-query CCDS DB by CCDS ID:51414.1Re-query CCDS DB by GeneID:545732See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170301.2 ENSMUSP00000130317.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170301.2Link to Ensembl Protein Viewer:ENSMUSP00000130317.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170301Re-query CCDS DB by Protein ID:ENSMUSP00000130317
Original member Current member NCBI NM_001177510.1 NP_001170981.1 Accepted alive Link to Nucleotide Sequence:NM_001177510.1Link to Protein Sequence:NP_001170981.1Re-query CCDS DB by Nucleotide ID:NM_001177510Re-query CCDS DB by Protein ID:NP_001170981Link to BLAST:NP_001170981.1

Chromosomal Locations for CCDS 51414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 11918141 11918147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 11919196 11919355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 11920629 11920778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 11921400 11921556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (474 nt):
ATGTGGAGGGCTCGAAGACACACATCATCCACTGCACCTGACCTAAGTAAGAAGGAGTTCAAAAAGGAAA
AAGAGAGGCTGACCACAGAGCTGCACCTCCTCATCCAGCTGAGAAATGAGCAGAGAGATCACCTGATCGA
TTTCAAAAAGAGTTCCAATTACAATAGGACCAAGCCCACCCAGAAGAAAAATCCATTCTATGAACAACTG
AGATCAACGAAGAACCAGGTCCTGTCTTCTGTGCATAAGTTAGAGATGGGGATAATTGAGGCCCAAGAGA
ATATCCAGGAGCTCAATAAGTGGATAGACTACTTTACAAACCTACATAGCCAGCTCCTGATGGAGAAGAA
TCTTAAGATGTCCATCACACAGAACCAGAAGAACAAGGAAGTAGAGATTGATTGGGCTCTCATTGAGAAA
TATTTGGTTGACTTGAACCTGAATGGACGAACAGGAGCAGACCAGCAACCATGA

Translation (157 aa):
MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKKSSNYNRTKPTQKKNPFYEQL
RSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEK
YLVDLNLNGRTGADQQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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