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Report for CCDS51352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51352.1 Reviewed, update pending Mus musculus 4 Gm13040 23 108 98 CCDS HistoryNCBI Gene:100040854Re-query CCDS DB by CCDS ID:51352.1Re-query CCDS DB by GeneID:100040854See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 51352.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169056.7 ENSMUSP00000127296.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169056.7Link to Ensembl Protein Viewer:ENSMUSP00000127296.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169056Re-query CCDS DB by Protein ID:ENSMUSP00000127296
Original member NCBI NM_001113736.1 NP_001107208.1 Updated not alive Link to Nucleotide Sequence:NM_001113736.1Link to Protein Sequence:NP_001107208.1Re-query CCDS DB by Nucleotide ID:NM_001113736Re-query CCDS DB by Protein ID:NP_001107208
Current member NCBI NM_001113736.2 NP_001107208.2 Pending alive Link to Nucleotide Sequence:NM_001113736.2Link to Protein Sequence:NP_001107208.2Re-query CCDS DB by Nucleotide ID:NM_001113736Re-query CCDS DB by Protein ID:NP_001107208Link to BLAST:NP_001107208.2

Chromosomal Locations for CCDS 51352.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 143535982 143535999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143539658 143539971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143540448 143541038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143541319 143541886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGCGGATTTCTGATCAGGTCTATTCATTGTACAGATTCATCAGGATGAGCTTCCAGGCTCCACCCACAC
TCCTGAGCTTGGCAGTACAGAGCCTGGCGAAGAATGAAGCCTTGGCCATCAATGCTCTGCAGGAACTGCC
CAGGGAGTTGTTCCCACCACTCTTCAAGGCAGCCTTCACTGGCAGACACACGAAGATACTGAAGGAAATG
GTGGGAGCCTGGCCTTTACCTTGCCTCCCTGTGGGGGCACTGATGAACGTCCCTGACATGACAATATTGC
AAGCTGTGCTGGATGGTGTAGACATGCAGCTGACAGGAAATTTTCACCCAAGAAAGAGGAAGCTTCAAGT
GCTGGACCTGAGAAATGTGCACCATCACTTCTGGGATGTTTCAGCTGGACCAGAGGATGGAGACGGCTCA
GCAGAGACAGTGTGTCAAAAGCAGAAAGCAACACGCCCTCATAGTTATGCACTGAGGCGACGTTTAAAGG
TGGTCACTGACCTTTGCCTTCAGTTTGATCTAGAGGAACATCAAACTTACTTCTTGCAGTGGGCACAGGA
GAGAAGAGGTTCCCTGAACCTGTGCTGTGTGAAGATGCAAATTAGGGAATTGCCTTTGCACACTGTCAGG
AAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAATTGCATATAGACTGGACTCTGTCCA
CACTGGCAAGCTTTGCACCTTGCCTTGGTCAGATCAAGAATCTTCGTAAACTCCATCTAACACTAGTCCA
CGAGAAACTCTTCACTTTTCTATGTACATCAACAGACATAAAGGAGAAGAGTGTCACCAAGTTCATTTCT
CAGTTCTCCAAACTCAACAGTCTCCAGCATCTCGACCTGGCTGGCCTCTACTTTCTCACTGGCCACATGA
ATGAATTGCTCGTGTGTCTGAAGACTCCGCTGGAGTTCCTGTCAATTGCTCTCTGCAAGTACTCACAGTC
AGACATGGAGTCCTTTGCCCAGTGTCAGAGTCTCCATCATCTCAAACATCTGCATTTGGCAGGTGTCATT
TTGCATGATCTGAGTCTTGTGCCTCTCGGAATTTTCCTAGAAAATGTTGCAAACACTCTGAAGACCTTGG
AATTAGAACATTGTAGGATGACAGACTCTCAGGTCAGCGCTTTTATCCCTGCCCTGAATAAGTGCTCTCA
GCTCATCGAGGTCAACTTCTGTGACAATGACATCTCCATGCCTGTCCTAACGAACCTTCTGCATCACACA
GCCAACCTAAGCCAGCTGATCATGGAGCTTTATCCTGCTCCTCTGGAGTGCTATGAAACCGGTTTTGTTC
TTAGACCAGAGAGAATTGTCCAGCTTTCTTCTGAGCTCATGAACATACTTTGCACTGTTAGGCAGCCCCA
CTCTATCTGTTTTGCCTCTCAGTTATGCCTTATATGTTCACAGCGCTGTACATATGGTCTGGAGACCAGA
CTTTGCCATTGTTGCCAGTAA

Translation (496 aa):
MRISDQVYSLYRFIRMSFQAPPTLLSLAVQSLAKNEALAINALQELPRELFPPLFKAAFTGRHTKILKEM
VGAWPLPCLPVGALMNVPDMTILQAVLDGVDMQLTGNFHPRKRKLQVLDLRNVHHHFWDVSAGPEDGDGS
AETVCQKQKATRPHSYALRRRLKVVTDLCLQFDLEEHQTYFLQWAQERRGSLNLCCVKMQIRELPLHTVR
KILQIFQPYCIEELELHIDWTLSTLASFAPCLGQIKNLRKLHLTLVHEKLFTFLCTSTDIKEKSVTKFIS
QFSKLNSLQHLDLAGLYFLTGHMNELLVCLKTPLEFLSIALCKYSQSDMESFAQCQSLHHLKHLHLAGVI
LHDLSLVPLGIFLENVANTLKTLELEHCRMTDSQVSAFIPALNKCSQLIEVNFCDNDISMPVLTNLLHHT
ANLSQLIMELYPAPLECYETGFVLRPERIVQLSSELMNILCTVRQPHSICFASQLCLICSQRCTYGLETR
LCHCCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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