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Report for CCDS51237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51237.1 Public Mus musculus 4 Dnajc6 23 108 98 CCDS HistoryNCBI Gene:72685Re-query CCDS DB by CCDS ID:51237.1Re-query CCDS DB by GeneID:72685See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038207.11 ENSMUSP00000044251.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038207.11Link to Ensembl Protein Viewer:ENSMUSP00000044251.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038207Re-query CCDS DB by Protein ID:ENSMUSP00000044251
Original member NCBI NM_001164584.1 NP_001158056.1 Updated not alive Link to Nucleotide Sequence:NM_001164584.1Link to Protein Sequence:NP_001158056.1Re-query CCDS DB by Nucleotide ID:NM_001164584Re-query CCDS DB by Protein ID:NP_001158056
Current member NCBI NM_001164584.2 NP_001158056.1 Accepted alive Link to Nucleotide Sequence:NM_001164584.2Link to Protein Sequence:NP_001158056.1Re-query CCDS DB by Nucleotide ID:NM_001164584Re-query CCDS DB by Protein ID:NP_001158056Link to BLAST:NP_001158056.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158056.1 938 Q80TZ3-1 938 100% 0 0

Chromosomal Locations for CCDS 51237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 101508086 101508182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101597801 101597951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101598951 101599000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101599095 101599243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101606589 101606711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101611225 101611358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101612862 101613056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101614173 101614290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101615581 101615660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101616486 101616679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101616785 101616865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101618394 101618828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101623661 101623795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101625693 101625761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101628037 101628156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101634991 101635254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101636758 101636900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101639266 101639442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101640472 101640573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2817 nt):
ATGACAAATCCAAAGTCAGGGGTTGCAGAGTCAGCCGGACTTGCCTGCTCTCGTGCAGCAGCGGGAGAAA
ACAGAATGAAAGATTCTGAAAATAAAGGTGCCTCGTCTCCAGACATGGAGCCCAGCTATGGGGGAGGCCT
TTTTGACATGGTGAAAGGCGGTGCAGGGAGGCTATTCAGTAACCTGAAGGACAACTTGAAAGACACTCTC
AAAGATACATCCTCCAGGGTCATCCAGTCTGTTAGCAGCTACACAAAGGGAGACCTAGACTTTACTTACG
TCACCTCCAGGATTATCGTGATGTCCTTTCCTGTGGATAGTGTTGACATAGGATTCAGGAATCAGGTTGA
TGACATCCGTAGCTTTTTGGATTCCAGACATCTTGACCACTACACAGTATACAACTTGTCACCCAAGTCT
TACCGAACTGCCAAGTTCCACAGCCGGGTCTCAGAGTGCAGTTGGCCCATCAGGCAGGCTCCAAGTCTAC
ACAACCTGTTTGCTGTGTGTAGGAATATGTATAACTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTGT
CCACTGCTTGGATGGACGGGCCGCGTCGTCAATCCTGGTTGGTGCTATGTTCATTTTCTGTAATCTCTAC
TCCACGCCTGGCCCTGCTGTTCGATTACTCTACGCAAAGCGACCAGGAATTGGACTGTCTCCGTCTCACA
GGAGGTACTTAGGCTACATGTGCGACCTACTTGCAGATAAGCCCTACCGCCCTCACTTCAAGCCACTCAC
GATCAAGGCAATCACTGTCAGCCCAGTTCCCTTCTTCAATAAGCAGAGAAATGGGTGCCGCCCTTACTGT
GACGTTCTGATTGGAGAAACTAAAATATATTCAACGTGCACAGACTTTGAACGAATGAAAGAATACCGTG
TCCAAGATGGGAAAATCTTCATCCCTCTGAACATCACAGTCCAAGGTGATGTCATCGTTTCCATGTACCA
CTTGCGGTCAACCATCGGGAGCCGGCTGCAGGCGAAGGTGACCAACACACAGATATTCCAGCTCCAGTTT
CATTCTGGGTTTATACCACTGGACACGACAGTTTTAAAGTTCACCAAGCCTGAGCTGGATGCATGTGATG
TACCAGAAAAATATCCTCAGCTGTTCCAAGTGACACTGGATATAGAAGTCCAGCCCCAAGACAAAGTGAT
CGACTTAACTCCACCATGGGAACACTACTGCACAAAAGATGTGAACCCCAGCATCCTCTTCTCCTCTCAG
CAGGAGCATCAGGACACTCTGGCCTTAGGGGGTCAGGCTCCAGCCGATCTCCCACCAGACCATCCCAGGA
ATCTTGGGCAAGGAGGCTTCTTTGCCTCTCTCTGTTGGCAAGATCAGAAATCAGAGAAGTCACGCTGTGA
GGAGGACCACGCTGCCCTGGTGAATCAGGAAAGTGAGCAGTCAGATGATGAGCTACTGACTCTCTCCAGC
CCCCATGGCAATGCAGAGGGTGATAAGCCTCATGGAGCCAAGAAGCCAGGCAAAAAGCAGCAGGAGCCAG
CTGCGCCTCCTCCCCCAGAGGAAGTGGACCTCCTGGGCCTGGAAGGGTCTGATGTGAGCACGAACTTCTC
TTCCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGCTGAGTGACCTGTTTGGGGGTGTAGGTGCCACAGGT
CCTGCTCAGGCAGGACAGGCTGGGGTAGAAGATGTGTTTCATCCTAGTGGACCTGTGTCTGCACAGTCCA
CACCGCGCCGAACCGCCACCTCCGCCTCTGCATCGCCAACCCTAAGAGTGGGAGAAGGTGCCACCTTTGA
CCCTTTTGGAGCCCCTGCTAAGCCACCAGGTCAGGATTTGTTGGGCTCCTTTCTAAACACATCCAGTGCT
TCTAGCGACCCCTTTCTGCAGCCCACGAGAAGCCCTTCCCCTACAGTGCATGCTTCTAGTACTCCTGCTG
TGAACATCCAGCCCGACATTGCTGGAGGTTGGGACTGGCACACCAAACCAGGAGGTTTTGGAATGGGGAG
CAAATCCGCTGCCACCAGCCCGACAGGCTCATCACATGGCACCCCCACCCATCAGAGCAAGCCCCAGACT
CTGGATCCCTTCGCTGACCTGGGGACACTAGGTAGCTCTTCATTTGCCAGCAAACCTACCACCCCAACTG
GATTGGGTGGAGGATTTCCACCTCTCAGCTCACCACAGAAAGCATCCCCCCAGCCAATGGGTGGAGGGTG
GCAGCAGCCAGCCGGCTACAACTGGCAGCAGACACAGTCTAAGCCACAGTCCAGTATGCCTCACTCCTCC
CCTCAGAACCGACCCAATTACAACGTGAGCTTCTCGGCTATGCCTGCAGGGCAGAGCGAACGTGGAAAAG
GATCTACTAACTTGGAAGGGAAACAAAAGGCTGCTGACTTTGAAGATCTGCTTTCTAGTCAAGGCTTCAA
TGCACACAAAGACAAAAAGGGGCCTCGAACAATAGCTGAGATGAGAAAGGAGGAGATGGCTAAGGAAATG
GATCCTGAAAAACTAAAGATCCTGGAGTGGATAGAGGGCAAAGAGAGAAACATCAGAGCTCTGCTTTCCA
CAATGCACACCGTGCTGTGGGCTGGGGAGACCAAATGGAAACCCGTGGGCATGGCGGATCTGGTGACGCC
GGAGCAAGTGAAGAAGGTGTACAGGAGGGCTGTGCTAGTGGTGCACCCTGACAAGGCAACTGGGCAACCC
TATGAACAATACGCAAAGATGATTTTCATGGAGCTAAATGATGCCTGGTCTGAATTTGAAAACCAAGGCC
AAAAGCCCTTGTATTAA

Translation (938 aa):
MTNPKSGVAESAGLACSRAAAGENRMKDSENKGASSPDMEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTL
KDTSSRVIQSVSSYTKGDLDFTYVTSRIIVMSFPVDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKS
YRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLY
STPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKAITVSPVPFFNKQRNGCRPYC
DVLIGETKIYSTCTDFERMKEYRVQDGKIFIPLNITVQGDVIVSMYHLRSTIGSRLQAKVTNTQIFQLQF
HSGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDIEVQPQDKVIDLTPPWEHYCTKDVNPSILFSSQ
QEHQDTLALGGQAPADLPPDHPRNLGQGGFFASLCWQDQKSEKSRCEEDHAALVNQESEQSDDELLTLSS
PHGNAEGDKPHGAKKPGKKQQEPAAPPPPEEVDLLGLEGSDVSTNFSSLAAPPSNSELLSDLFGGVGATG
PAQAGQAGVEDVFHPSGPVSAQSTPRRTATSASASPTLRVGEGATFDPFGAPAKPPGQDLLGSFLNTSSA
SSDPFLQPTRSPSPTVHASSTPAVNIQPDIAGGWDWHTKPGGFGMGSKSAATSPTGSSHGTPTHQSKPQT
LDPFADLGTLGSSSFASKPTTPTGLGGGFPPLSSPQKASPQPMGGGWQQPAGYNWQQTQSKPQSSMPHSS
PQNRPNYNVSFSAMPAGQSERGKGSTNLEGKQKAADFEDLLSSQGFNAHKDKKGPRTIAEMRKEEMAKEM
DPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKATGQP
YEQYAKMIFMELNDAWSEFENQGQKPLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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