NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51221.1 Public Mus musculus 4 Pramel32 23 108 98 CCDS HistoryNCBI Gene:381590Re-query CCDS DB by CCDS ID:51221.1Re-query CCDS DB by GeneID:381590See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51221.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053304.9 ENSMUSP00000056691.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053304.9Link to Ensembl Protein Viewer:ENSMUSP00000056691.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000053304Re-query CCDS DB by Protein ID:ENSMUSP00000056691
Original member Current member NCBI NM_198663.3 NP_941065.2 Accepted alive Link to Nucleotide Sequence:NM_198663.3Link to Protein Sequence:NP_941065.2Re-query CCDS DB by Nucleotide ID:NM_198663Re-query CCDS DB by Protein ID:NP_941065Link to BLAST:NP_941065.2

Chromosomal Locations for CCDS 51221.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 88627622 88628189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88628780 88629355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88629829 88630139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88634116 88634142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGATCTGTCACCAGTGTCCCGATCAGCATGACTCTTTAGAAGAGGAAACAATGAATGCCTACTCCCCAC
CCACCCTCCTGCAGCTGGCAAGGCAGAAGCTACTGAGGGAGGAGGCCTTGGCCATTTCTGCTCTCAAGGA
CCTACCCAGAGAGCTGCTACCAGAGATGTTTGAGGAGGCCTTCACTGATGAATGTACAAAGACCTTAAGG
GCCATGATACCTATGTGGCCCTTCCCATGCCTTCCTGTAGGAACGCTGATAAAGAACCCCAACCTGGAGA
CTTTGAAGGCTGTGCTTGAGGGACTAGATATACTGCTTGCACCAAAGGTTCGCTCCAGTAGGTGCAAACT
CAGAGTACTCAATTTGAGGAATGAGCACCATGAGTTTTGGAGGATATGGGCTGGATCCCATGAAGATGAA
TGCTTACCACAGTTGACACAGAAGCAGCCAGTGGAGAATAGTCCTGACTGTGGAGTGAAGAAACATTTGC
AGGTGACAACTGACTTCGAACTCATGAAGGGCAGACTTGATGAATCTGCTACATACTTGTTGCAGTGGGC
TGAGCAGAGAAAAGATTCCATTCATTTATGCTGTAGAAAGCTGCAGATTCAGGGCTTATCCAAAGACGCA
TTCATAGAAATCTTCAAAATTATAGATGCAAACTGTGTGCAGGAGCTGGAGCTAAGTTGTATCTGGGAAG
AAGAGTTGCCTTTTCTTAATCCCTACCTGAGACAGATGAAAAATCTTCTCACTCTCAAGCTAGATGACAT
CACAGAAGTTACTATGGATGGTGATGATTTGTTTGACGAGAAGAAAAGGCGCAAGTTGATTTCTCAGCTT
TTCTCATTCTACTGTCTCCAGAATCTCTATGTAGATGGTACCTTTGCAGAAGGAAATATGATAGAATGCC
TCAGGTACCTGAAGAAGCCCTTGGAGACTTTGTGCCTCCGATACTGTTTTCTCTCACAGACGGACTTGGA
TTACCTGCCTCATTGCCTGAATATTTGTAAGCTCAAACATCTGAGCCTGAGTTATATATATTTATTTAAT
TTATTCCTTGAGCCTCTTGGGATTCTTCTTGAGAGAGTTAGAGATACCCTGCAAACCCTGGAATTGCAAT
TATGTGGGTTGACGGACCGTCATTTCAGTGTCCTCCTGCCTGCCTTAAGCCAATGCTCCCACCTCACAAA
GATCAATTTCTATGAAAATACCATCTCTCTACCTGTTCTGAAACAACTTTTGTACCACACAGCCAACCTG
AGCCAGCTGACTCAGGAACAGTACCCTGCCCCTCAGGAGTGCTATGATAACATGCGTGGAGTTGAAACAC
ACAGATTGGGAAACATATGCACTGAGCTTCTGGATATACTCAGGGCCAAAAGACAGCCCGAGAGAGTTGC
CTTTGCTACATCCCGTTGCATTAAATGTCGTGGCTTCTTGGTCTATGATCTGGAGACCCAACGTTGCTTT
TTCCAGCACTAA

Translation (493 aa):
MICHQCPDQHDSLEEETMNAYSPPTLLQLARQKLLREEALAISALKDLPRELLPEMFEEAFTDECTKTLR
AMIPMWPFPCLPVGTLIKNPNLETLKAVLEGLDILLAPKVRSSRCKLRVLNLRNEHHEFWRIWAGSHEDE
CLPQLTQKQPVENSPDCGVKKHLQVTTDFELMKGRLDESATYLLQWAEQRKDSIHLCCRKLQIQGLSKDA
FIEIFKIIDANCVQELELSCIWEEELPFLNPYLRQMKNLLTLKLDDITEVTMDGDDLFDEKKRRKLISQL
FSFYCLQNLYVDGTFAEGNMIECLRYLKKPLETLCLRYCFLSQTDLDYLPHCLNICKLKHLSLSYIYLFN
LFLEPLGILLERVRDTLQTLELQLCGLTDRHFSVLLPALSQCSHLTKINFYENTISLPVLKQLLYHTANL
SQLTQEQYPAPQECYDNMRGVETHRLGNICTELLDILRAKRQPERVAFATSRCIKCRGFLVYDLETQRCF
FQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH