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Report for CCDS51184.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51184.1 Public Mus musculus 4 Susd1 23 108 98 CCDS HistoryNCBI Gene:634731Re-query CCDS DB by CCDS ID:51184.1Re-query CCDS DB by GeneID:634731See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51184.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040166.13 ENSMUSP00000048201.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040166.13Link to Ensembl Protein Viewer:ENSMUSP00000048201.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040166Re-query CCDS DB by Protein ID:ENSMUSP00000048201
Original member NCBI NM_001163288.2 NP_001156760.2 Updated not alive Link to Nucleotide Sequence:NM_001163288.2Link to Protein Sequence:NP_001156760.2Re-query CCDS DB by Nucleotide ID:NM_001163288Re-query CCDS DB by Protein ID:NP_001156760
Current member NCBI NM_001163288.3 NP_001156760.2 Accepted alive Link to Nucleotide Sequence:NM_001163288.3Link to Protein Sequence:NP_001156760.2Re-query CCDS DB by Nucleotide ID:NM_001163288Re-query CCDS DB by Protein ID:NP_001156760Link to BLAST:NP_001156760.2

Chromosomal Locations for CCDS 51184.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 59315409 59315409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59315712 59315805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59324868 59324907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59329463 59329721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59332937 59333033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59349826 59350012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59351638 59351729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59365722 59365914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59369531 59369640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59379599 59379785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59380861 59380958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59390573 59390752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59411270 59411449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59412170 59412322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59423995 59424150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59427951 59428064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59438206 59438323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2259 nt):
ATGGGCCGGGGTCCCCGGGGCACGCGCCGCTCTCCAGGATGCGGGTTGCAGCGGCTGCTGCGGCTCGTGC
TGCTGCTCAGCCTAGCCCGCGGCGTCAGCGGAGAGCCTGGCACGGAAGATGTAGATGTCTGTGCCACGTG
CCATGAACATGCCACATGCCAGCAAAAGGAAGGGAAGAGAATCTGCATTTGCAACTATGGGTTTTGGGGC
AACGGGAGGACACGGTGTGTTGACAAAGATGAGTGCCAGTTTGGAGCCACTGTGATCTGTGGGAACCACA
CATCCTGCCACAACACGCCTGGAGGGTTCTACTGCATTTGCCACGAGGGCTACCGGGCCACAAATAACAA
CGAGACGTTCATCCCCAATGACGGCACTTTCTGTGCAGACATCGATGAGTGTGAAGATTCTGGCCTGTGC
AGACATGGAGGGCGGTGTGTCAATACTCCTGGGAGCTTTGCATGCTACTGCATGGAAGGGTATGTGGCAA
AGAACGGGCCTGAGCCTTTCCACCCACGCACGGATGCCACATCGTGCACAGAAATAGACTGTGGCATCCC
TCCTGAAGTTCCTGAGGGCTACGTCGTGGGAAGCTACAGCTCCACACTGGGCGGCCAGGCCCATTATAGC
TGCAAGGAAGGGTTTCTCAGCGTCTCAGGAGACAGAATTTCACGATGCACAGCCCTGGGTGTGTGGGAAC
CTCCCAAGTTACATTGCCAAGAGATCAGCTGTGGCAGCCCTCCTGAAATTCAGAACGCCATCTTGGTCGG
GAATCACAGCTCCAGACAGGGGAGTGTGGCTCATTATGACTGTCAGGAGGGCTTTGAGAGTCCAGGAGGA
AAGATCACTTCCGTTTGCACAGAGAAAGGCGCCTGGAGTGAAATCACTTATGCATGCACAGAAATAATGA
TAGAAATTCATGATGTGTTGGTGTTTAATGACACCTGTGTGAGATGGCAAATAAGTCCAGAGAGAGTGAA
CGCCAGGATCGTGTACTTGATACGCGTTGAAAGACAGCAGCCGGATGCTGCGGAATCAGTTTATGAGGAG
ACAGTCAATGTGACCACAGACAGCAGAACCCCAGAAGTGTGCCTGCACCTCCAACAAGGAACCAATTACA
CCATAAGCATTTCTGCAGCCCCTCCCAGGCGCTCTGTGCCCGCCATCCTTGGCTTCCAGACCCCTGAAGA
TGATCTCTTAGAAGATGACGGACTTTTCAATATCTCAGTATTTAATGAAACTTGTTTGACGTTGAGCAGG
CACTCTAGGCAAGTTGGATCAGAACAAATGTACCAAGTGGAGGTTCTGGGTCAGAGGTGGTATCTAGAGA
GCTCCTACCATGCTGCTCTCTTTAACTTCACAACAAGAGACCGAGCTCCAGAAGTGTGTTTAGATCTGTA
CCCCGCTACTGATTACACGATAAACATCACCCTTCTGAGACCCACTGAGCCGCGCTCCGCACAAATAACC
ATAACAACCTCAGTGACAGCAAAACAGACCATCGCTAATATTTCGGTATATAATGATACCTGCCTGAGAT
GGAGCAGCCTCAAGACAGCTGATGTACTAGAGATGTATTTATTCCACATTTGGGGCCAGAGATGGTATCA
GAAGGCATTTGTCCAGGAAATGGTCTTCAATACAACCAGCAGCAGCCAGGACCCTGAGATATGCCTGGAC
CTGCATCAAGGCACCAGCTACAACGTTAGCCTTCAGGCTCTGTCTTCGGCACTTCCCGTGGTCATCTACC
TGACAACCCAGATCACAGAGCCCCCACTTCCTGAAGTAGACTTTTTCACTGTGCGGGGAAGGCCTCTACC
ACGCTTCACGCTGAGGAAAGTCAAGGAGATAAATGGACCTATCAGTTCATATCAGGTGTTGGTCCTTCCC
CTGTCCTTGCAAAGCACATTTTCTTGTGATTCTGAAGGCATGACTTCATTCTTTGGCAACACTTCTCCTG
CTGACGGATATGTGGCTGCAGAAATCCTGGCCAGTGATGTTCCAGACGACACGTTGGAGATATCTATTGG
AGACAGGCTCTACTATGGGGAATATTACAATGCACCTTTGAAAACAGGAAATGAGTACTGCATTCTGTTA
CGGATCACAAGTGAATGGAATAAGGTGAGAAGATATTCCTGTGCTGTCTGGGCTGAGGTAAAAGACTCAT
CGCTCACAGCGCAGCAGATGGTGGGTGTTGGACTGGGCTCCGTGGCTTTTGTGACCATCCTTGCATTCTT
CTCCTTCTCAGCAGTGTGA

Translation (752 aa):
MGRGPRGTRRSPGCGLQRLLRLVLLLSLARGVSGEPGTEDVDVCATCHEHATCQQKEGKRICICNYGFWG
NGRTRCVDKDECQFGATVICGNHTSCHNTPGGFYCICHEGYRATNNNETFIPNDGTFCADIDECEDSGLC
RHGGRCVNTPGSFACYCMEGYVAKNGPEPFHPRTDATSCTEIDCGIPPEVPEGYVVGSYSSTLGGQAHYS
CKEGFLSVSGDRISRCTALGVWEPPKLHCQEISCGSPPEIQNAILVGNHSSRQGSVAHYDCQEGFESPGG
KITSVCTEKGAWSEITYACTEIMIEIHDVLVFNDTCVRWQISPERVNARIVYLIRVERQQPDAAESVYEE
TVNVTTDSRTPEVCLHLQQGTNYTISISAAPPRRSVPAILGFQTPEDDLLEDDGLFNISVFNETCLTLSR
HSRQVGSEQMYQVEVLGQRWYLESSYHAALFNFTTRDRAPEVCLDLYPATDYTINITLLRPTEPRSAQIT
ITTSVTAKQTIANISVYNDTCLRWSSLKTADVLEMYLFHIWGQRWYQKAFVQEMVFNTTSSSQDPEICLD
LHQGTSYNVSLQALSSALPVVIYLTTQITEPPLPEVDFFTVRGRPLPRFTLRKVKEINGPISSYQVLVLP
LSLQSTFSCDSEGMTSFFGNTSPADGYVAAEILASDVPDDTLEISIGDRLYYGEYYNAPLKTGNEYCILL
RITSEWNKVRRYSCAVWAEVKDSSLTAQQMVGVGLGSVAFVTILAFFSFSAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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