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Report for CCDS51168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51168.1 Public Mus musculus 4 Tmem8b 23 108 98 CCDS HistoryNCBI Gene:242409Re-query CCDS DB by CCDS ID:51168.1Re-query CCDS DB by GeneID:242409See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51168.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107864.7 ENSMUSP00000103496.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107864.7Link to Ensembl Protein Viewer:ENSMUSP00000103496.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107864Re-query CCDS DB by Protein ID:ENSMUSP00000103496
Original member Current member EBI ENSMUST00000107865.8 ENSMUSP00000103497.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107865.8Link to Ensembl Protein Viewer:ENSMUSP00000103497.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107865Re-query CCDS DB by Protein ID:ENSMUSP00000103497
Original member Current member EBI ENSMUST00000167153.7 ENSMUSP00000129760.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167153.7Link to Ensembl Protein Viewer:ENSMUSP00000129760.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167153Re-query CCDS DB by Protein ID:ENSMUSP00000129760
Original member Current member NCBI NM_001085508.2 NP_001078977.1 Accepted alive Link to Nucleotide Sequence:NM_001085508.2Link to Protein Sequence:NP_001078977.1Re-query CCDS DB by Nucleotide ID:NM_001085508Re-query CCDS DB by Protein ID:NP_001078977Link to BLAST:NP_001078977.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078977.1 472 B1AWJ5 472 100% 0 0

Chromosomal Locations for CCDS 51168.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43682006 43682284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43685297 43685390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43685526 43685649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43685728 43685870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43686011 43686189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43689427 43689573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43689691 43689807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43690027 43690362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGAACATGCCCCAGTCACTAGGCACCCAGCCACTGCCTCCGGAGCCACCATCCCTGGGGACTCCTATAG
AAGGGTCTGGAGCCATAGCACCCACTGAGCACTGCTGGCCAGTGCGTCCGACTCTGCGCAATGAGCTGGA
TACCTTCTCTGTCCACTTCTACATCTTTTTTGGTCCCAGCGTGGCCCTTCCACCTGAGCGCCCAGCTGTA
TTTGCCCTGAGGCTGTTGCCGGTGCTGGACAGCGGGGGCGTCCTTAGCCTGGAGCTCCAGCTCAATGCGA
GCTCTCTGCGCCAGGAAAATGTAACAGTATTCGGATGCCTGACTCATGAGGTGCCCTTGAGCCTGGGGGA
TGCTGCTGTGACCTGTTCCAAAGAGTCCCTGGCAGGCTTCCTTCTCTCGGTCAGTGCCACCTCCAGAGTG
GCCAGGCTTCGAATCCCATTCCCACAGACGGGGACCTGGTTCCTGACCCTCCGTTCTCTGTGCGGGGTGG
GACCTCGGTTTGTGCGGTGCCGCAATGCAACGGCAGAAGTGCGGCTGCGTACCTTCTTGTCCCCATGTGT
GGATGACTGTGGGCCCTATGGCCAGTGCAAACTGCTGCGCACCCACAACTACCTGTACGCGGCCTGCGAG
TGCAAGGCTGGGTGGCGGGGCTGGGGTTGCACAGACAGTGCCGACGCGCTCACCTATGGATTCCAGCTGC
TGTCCACACTCCTCCTCTGCCTGAGCAACCTCATGTTTTTGCCACCTGTGGTCCTGGCCATTCGGAGCCG
ATACGTGCTGGAAGCTGCCGTCTACACCTTCACCATGTTCTTCTCCACGTTCTATCATGCCTGTGACCAG
CCAGGCATTGTGGTTTTCTGTATCATGGACTATGATGTACTTCAGTTCTGTGATTTCCTGGGCTCCTTAA
TGTCCGTGTGGGTCACCGTCATAGCCATGGCTCGTCTGCAGCCTGTGATCAAGCAGGTGCTGTATCTGCT
CGGGGCTATGCTGCTGTCTATGGCTCTGCAGCTTGACCGGCATGGACTCTGGAATCTGCTGGGACCCAGT
CTCTTTGCCCTCGGGATCTTGGCCACAGCTTGGACAGTTCGCAGCGTCCGGCGCCGGCACTGTTACCCAC
CGACATGGCGCCGCTGGCTTTTCTACCTGTGTCCCGGCAGCCTGATTGCTGGCAGTGCCGTTCTACTGTA
TGCTTTCGTGGAGACTCGGGACAACTACTTCTACATTCACAGCATTTGGCACATGCTCATTGCTGGCAGT
GTGGGCTTCCTGCTGCCTCCCCGTGCCAAGACTGACCGCCGGGTCCCTTCTGGAGCCCGGGCCAGGGGCT
GCGGTTACCAGCTGTGCATCAATGAACAGGAGGAGCTGGGACTTGTGGGCCCAGGAGGGACCACTGTCAG
CAGCATCTGTGTCAGCTGA

Translation (472 aa):
MNMPQSLGTQPLPPEPPSLGTPIEGSGAIAPTEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAV
FALRLLPVLDSGGVLSLELQLNASSLRQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLLSVSATSRV
ARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACE
CKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQ
PGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVIKQVLYLLGAMLLSMALQLDRHGLWNLLGPS
LFALGILATAWTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGS
VGFLLPPRAKTDRRVPSGARARGCGYQLCINEQEELGLVGPGGTTVSSICVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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