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Report for CCDS51141.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51141.1 Public Mus musculus 4 Fam219a 23 108 98 CCDS HistoryNCBI Gene:71901Re-query CCDS DB by CCDS ID:51141.1Re-query CCDS DB by GeneID:71901See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51141.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108052.9 ENSMUSP00000103687.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108052.9Link to Ensembl Protein Viewer:ENSMUSP00000103687.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108052Re-query CCDS DB by Protein ID:ENSMUSP00000103687
Original member NCBI NM_001159583.1 NP_001153055.1 Updated not alive Link to Nucleotide Sequence:NM_001159583.1Link to Protein Sequence:NP_001153055.1Re-query CCDS DB by Nucleotide ID:NM_001159583Re-query CCDS DB by Protein ID:NP_001153055
Current member NCBI NM_001159583.2 NP_001153055.1 Accepted alive Link to Nucleotide Sequence:NM_001159583.2Link to Protein Sequence:NP_001153055.1Re-query CCDS DB by Nucleotide ID:NM_001159583Re-query CCDS DB by Protein ID:NP_001153055Link to BLAST:NP_001153055.1

Chromosomal Locations for CCDS 51141.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41520240 41520398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41520912 41520966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41521612 41521692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41521867 41521969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41524366 41524414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41569177 41569236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGATGGAGGAGATCGACCGGTTCCAGGTGCCCACCGCGCACTCGGAGATGCAGCCGCTGGATCCAGCCG
CAGCCTCTATCTCAGACCGAGACTGTGACGCCCGGGAGGAGAAGCAACGGGAGCTGGCCCGGAAGGGTTC
CCTGAAGAACGGCAGCATGGGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAACGTCATGGCCCGGACG
AGGCTGGTCGTCCCTAATAAAGGCTACTCCTCGCTGGACCAGAGCCCTGATGAGAAGCCACTGGTAGCTC
TTGACACAGACAGCGACGATGACTTTGACATGTCCAGATACTCTTCCTCTGGCTACTCCTCTGCCGAGCA
GATCAACCAAGATTTGAACATCCAGCTGCTGAAAGATGGCTACCGGTTAGACGAGATCCCCGACGACGAG
GACCTAGATCTCATCCCCCCCAAGTCTGTGAACCCCACCTGCATGTGTTGTCAGGCCACTTCCTCCACCG
CCTGCCACATTCAGTAG

Translation (168 aa):
MMEEIDRFQVPTAHSEMQPLDPAAASISDRDCDAREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMART
RLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDE
DLDLIPPKSVNPTCMCCQATSSTACHIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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