NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51100.1 Public Mus musculus 3 Zranb2 23 108 98 CCDS HistoryNCBI Gene:53861Re-query CCDS DB by CCDS ID:51100.1Re-query CCDS DB by GeneID:53861See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51100.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106058.7 ENSMUSP00000101673.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106058.7Link to Ensembl Protein Viewer:ENSMUSP00000101673.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106058Re-query CCDS DB by Protein ID:ENSMUSP00000101673
Original member NCBI NM_017381.3 NP_059077.1 Updated not alive Link to Nucleotide Sequence:NM_017381.3Link to Protein Sequence:NP_059077.1Re-query CCDS DB by Nucleotide ID:NM_017381Re-query CCDS DB by Protein ID:NP_059077
Current member NCBI NM_017381.4 NP_059077.1 Accepted alive Link to Nucleotide Sequence:NM_017381.4Link to Protein Sequence:NP_059077.1Re-query CCDS DB by Nucleotide ID:NM_017381Re-query CCDS DB by Protein ID:NP_059077Link to BLAST:NP_059077.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059077.1 330 Q9R020-1 330 100% 0 0

Chromosomal Locations for CCDS 51100.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 157534419 157534474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157536334 157536386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157536478 157536586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157537587 157537669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157540633 157540709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157541055 157541189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157541700 157541869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157543158 157543244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157544964 157545122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157546675 157546738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGTCGACCAAGAATTTCCGAGTCAGTGACGGGGACTGGATCTGCCCTGACAAGAAGTGTGGAAATGTAA
ACTTTGCTAGGAGAACCAGCTGTAACAGATGTGGTCGAGAAAAGACAACTGAGGCCAAGATGATGAAAGC
TGGGGGAACAGAAATAGGAAAGACACTGGCAGAGAAGAGCCGGGGCTTATTTAGTGCCAATGATTGGCAA
TGCAAAACTTGCAGTAATGTGAATTGGGCTAGAAGATCAGAGTGTAACATGTGTAATACTCCAAAGTATG
CTAAATTAGAAGAAAGAACAGGATATGGAGGTGGTTTTAATGAAAGAGAGAATGTTGAATACATAGAAAG
AGAAGAATCTGATGGGGAATATGATGAGTTTGGACGTAAAAAGAAAAAATACAGGGGGAAAGCAGTTGGC
CCTGCATCTATATTAAAGGAAGTTGAAGATAAAGAGTCAGAGGGAGAAGAAGAGGATGAGGATGAAGATC
TATCTAAGTATAAGCTAGATGAGGACGAGGATGAAGATGATGCTGATCTCTCAAAATATAATCTTGATGC
CAGCGAAGAAGAAGATAGTAACAAAAAGAAAAGCAATAGGCGGAGCCGCTCAAAGTCACGATCGTCTCAC
TCAAGGTCTTCATCACGCTCATCCTCCCCCTCAAGTTCAAGGTCCAGGTCCAGGTCCCGTTCAAGAAGCT
CTTCCAGTTCGCAGTCCAGGTCTCACTCCGGTTCCAGAGAACATTCCAGATCCCGTGGTTCGAAATCAAG
ATCCAGCTCCAGGTCCCACAGGGGCTCTTCTTCCCCAAGAAAAAGATCTTATTCGAGTTCTTCGTCATCT
CCTGAAAGAGACAGGAAGAGGAGTCGCTCTAGACCTTCTTCACCAGCTGTTCGCAAAAAAAGACGAACGA
GATCACGGTCACCCGAAAGGCACCACAGGTCGTCCTCCGGATCAACACATTCTGGTTCCCGTTCAAGTTC
AAAAAAGAAATAA

Translation (330 aa):
MSTKNFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSANDWQ
CKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGKAVG
PASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSH
SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSHSGSREHSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSS
PERDRKRSRSRPSSPAVRKKRRTRSRSPERHHRSSSGSTHSGSRSSSKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH