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Report for CCDS51016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51016.1 Public Mus musculus 3 Hsd3b3 23 108 98 CCDS HistoryNCBI Gene:15494Re-query CCDS DB by CCDS ID:51016.1Re-query CCDS DB by GeneID:15494See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090743.12 ENSMUSP00000088246.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090743.12Link to Ensembl Protein Viewer:ENSMUSP00000088246.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000090743Re-query CCDS DB by Protein ID:ENSMUSP00000088246
Original member Current member EBI ENSMUST00000107019.7 ENSMUSP00000102633.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107019.7Link to Ensembl Protein Viewer:ENSMUSP00000102633.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107019Re-query CCDS DB by Protein ID:ENSMUSP00000102633
Original member Current member NCBI NM_001161742.1 NP_001155214.1 Accepted alive Link to Nucleotide Sequence:NM_001161742.1Link to Protein Sequence:NP_001155214.1Re-query CCDS DB by Nucleotide ID:NM_001161742Re-query CCDS DB by Protein ID:NP_001155214Link to BLAST:NP_001155214.1
Original member Current member NCBI NM_001161743.1 NP_001155215.1 Accepted alive Link to Nucleotide Sequence:NM_001161743.1Link to Protein Sequence:NP_001155215.1Re-query CCDS DB by Nucleotide ID:NM_001161743Re-query CCDS DB by Protein ID:NP_001155215Link to BLAST:NP_001155215.1
Original member Current member NCBI NM_001161744.1 NP_001155216.1 Accepted alive Link to Nucleotide Sequence:NM_001161744.1Link to Protein Sequence:NP_001155216.1Re-query CCDS DB by Nucleotide ID:NM_001161744Re-query CCDS DB by Protein ID:NP_001155216Link to BLAST:NP_001155216.1
Original member Current member NCBI NM_001161745.1 NP_001155217.1 Accepted alive Link to Nucleotide Sequence:NM_001161745.1Link to Protein Sequence:NP_001155217.1Re-query CCDS DB by Nucleotide ID:NM_001161745Re-query CCDS DB by Protein ID:NP_001155217Link to BLAST:NP_001155217.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155214.1 373 P26150 373 100% 0 0
NP_001155215.1 373 P26150 373 100% 0 0
NP_001155216.1 373 P26150 373 100% 0 0
NP_001155217.1 373 P26150 373 100% 0 0

Chromosomal Locations for CCDS 51016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 98741884 98742695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98743823 98743987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98753311 98753455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGCCTGGGTGGAGCTGCCTGGTGACTGGAGCAGGAGGGTTTTTGGGCCAGAGGATCATCCAGTTGTTGG
TGCAGGAGAAAGATCTTGAGGAGATCAGGGTCCTGGACAAGGTCTTCAAACCTGAAACCAGGGAGCAATT
CTTCAACCTAGGGACAAGCATCAAGGTGACAGTGTTGGAAGGAGACATTCTTGACACCCAGTACCTGAGG
AGAGCTTGCCAGGGCATCTCTGTTGTCATCCATACTGCTGCCATCATTGATGTCACAGGTGTCATTCCCA
GGCAGACCATCCTAGATGTCAATCTGAAAGGTACCCAGAACTTATTGGAGGCCTGTATCCAAGCCAGTGT
GCCAGCCTTCATCTTCTCCAGCTCAGTTGACGTTGCAGGGCCCAACTCTTACAAGGACATTGTCCTGAAT
GGCCACGAGGACGAGCATCGTGAAAGCACATGGTCTGACCCATACCCATACAGCAAAAAGATGGCTGAGA
AGGCAGTGCTGGCAGCCAATGGGAGCATGCTGAAAAATGGTGGCACTTTGCAAACTTGTGCATTAAGGCC
CATGTGCATTTATGGGGAGAGAAGTCAATTCCTTTCTAACACAATAATTAAGGCCCTCAAAAATAAGTTT
ATTCTGAGAGGTGGGGGCAAATTCTCCACAGCCAACCCAGTATATGTGGGCAATGTGGCCTGGGCACACA
TTCTGGCTGCCAGGGGCCTTCGAAACCCCAAGAAGTCACCAAATATCCAAGGAGAGTTCTACTACATCTC
AGATGATACCCCTCACCAAAGTTATGATGATTTAAATTACACCCTGAGCAAGGAGTGGGGCTTCTGCCTC
AATTCCAGGTGGTACCTTCCTGTGCCCATACTGTACTGGCTTGCCTTCCTGCTGGAAACTGTGAGCTTCC
TGCTGAGTCCAATCTACAGATATATACCTCCCTTTAACCGCCACTTGGTCACACTGACAGCTAGTACGTT
CACTTTCTCCTACAAGAAAGCTCAGCGAGATCTGGGCTATGAGCCACTTGTCAGCTGGGAGGAAGCCAAG
CAGAAAACCTCAGAGTGGATCGGGACACTAGTGGAGCAGCACAGGGAGACACTGGACACAAAGTCTCAGT
GA

Translation (373 aa):
MPGWSCLVTGAGGFLGQRIIQLLVQEKDLEEIRVLDKVFKPETREQFFNLGTSIKVTVLEGDILDTQYLR
RACQGISVVIHTAAIIDVTGVIPRQTILDVNLKGTQNLLEACIQASVPAFIFSSSVDVAGPNSYKDIVLN
GHEDEHRESTWSDPYPYSKKMAEKAVLAANGSMLKNGGTLQTCALRPMCIYGERSQFLSNTIIKALKNKF
ILRGGGKFSTANPVYVGNVAWAHILAARGLRNPKKSPNIQGEFYYISDDTPHQSYDDLNYTLSKEWGFCL
NSRWYLPVPILYWLAFLLETVSFLLSPIYRYIPPFNRHLVTLTASTFTFSYKKAQRDLGYEPLVSWEEAK
QKTSEWIGTLVEQHRETLDTKSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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