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Report for CCDS50980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50980.1 Public Mus musculus 3 Tchh 23 108 98 CCDS HistoryNCBI Gene:99681Re-query CCDS DB by CCDS ID:50980.1Re-query CCDS DB by GeneID:99681See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064257.5 ENSMUSP00000069525.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064257.5Link to Ensembl Protein Viewer:ENSMUSP00000069525.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000064257Re-query CCDS DB by Protein ID:ENSMUSP00000069525
Original member NCBI NM_001163098.1 NP_001156570.1 Updated not alive Link to Nucleotide Sequence:NM_001163098.1Link to Protein Sequence:NP_001156570.1Re-query CCDS DB by Nucleotide ID:NM_001163098Re-query CCDS DB by Protein ID:NP_001156570
Current member NCBI NM_001163098.2 NP_001156570.1 Accepted alive Link to Nucleotide Sequence:NM_001163098.2Link to Protein Sequence:NP_001156570.1Re-query CCDS DB by Nucleotide ID:NM_001163098Re-query CCDS DB by Protein ID:NP_001156570Link to BLAST:NP_001156570.1

Chromosomal Locations for CCDS 50980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 93442330 93442467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 93443393 93448054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4800 nt):
ATGTCTCCACTTATAAGAAGCATTGTCGATATCACTGAAGTTTTCAATCAATATGCATCACAAAGTTGTG
ATGGAGCATCACTTAGCAAGAAAGACCTGAAAAACCTCCTTGAGAGAGAACTTGGAGATGTCCTTCAGAG
ACCACATGACCCTGAGACGATAGACCTGACCCTAGAACTTCTGGATCGCGACTGCAACGGGCGTGTTGAT
TTCAACGAATTCCTCCTGTTCCTTTTCAAGATTGCTCAAGCTTGCTATTATGCTCTCGATCAGGCCGCAG
AGCTAGGCGAGAAGAGAGCCCTGCCCAATGAAAAGAGGAACCTGTCACAAGATCGCAGGCAAGAAGACCA
AAGGAGATTCGAGCCCCGAAGCAGACAACTGGACGAAGAACCTGGGCGCCGAAGCTGGCAGAAGAGACGT
GAGCAGGAGGAGCGCGCTGAGGAGCAGCGGCTGGAGCAGCGCTACAGGCAGCACCGCGATGAAGAGCAGA
GACTGCAAAGGCGAGAACTGCAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAA
GGGTCGTGACGCGGAGGAGTTTTCTGAGGTAGAGGAACAGCAAAGGCAAGAGAGGCAGGAACTCAAGGGC
AAGGGCCAAACAGAAGAGAGAAGGCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGC
GCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACAGAGGCGCGA
GCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGCAAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAG
GAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGCTGAGGCAGGAGCTGAGGCGCGAGCAGGAGC
TAAGGCGCGAGCAGGAGTTGAGGCAGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAG
GCAGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACTGAGGCGTGAGCAA
GAGCTAAGACGCGAGCAAGAGCTGAGGCAGGAGCTGGCTGAGGAGGACGAGCTGACGCGGATCCGGGAAC
CCGACGAGAGCATTACCCAGAGGTGGCAGTGGCAGCTCGAAAACGAGGCAGACGCCCGTCAGAACAAGGT
CTACTCTAGGCCTAGCAGGCAGGAGCAGAGGCTTCGCCAGGAGCTGGGGGAGCGTCAGCTCCGGGAGCAG
GAGGAGCAGCGCCGCGACCTCCAACAGGAGCGTCCCGCTGAGGAGGCGCGCCAGCGCAACCAGTGGGAGA
GGCCGCAGCGGGCGGAGGAGCGCCTGGAGCAGGAGCAGCGGTTCCGCGACAGGGAGGAGCAGCGCTTCCG
GGAGGAGAAGCTGCAACGAGCAGAGCTCCAGGACAGCCTCCTAGATGAAGAACAGAGGCGACTCCAGGAG
GAACGCCGAGAGCCAAACAGGAGCCGGCAACTGAGGGAAGAAAGCCAGAGGCGCCGCACACTGTACGCCA
AACCCAGCCAGAGGCAGCGTAGGGAGGAGGAGCTACGCGAGGAACGGCTGTTGCAAGAAGAGCAGCGCCA
GCAGCGGGAGAGGAAACACCGCAGGGAGGAGGATCTGCAGCAGGAGGAAAAGCGGCTGCAGCAAGACGAA
GAGCAACTGCAGCGAGAAAGGAGGCGCCTGCAGCGGGAGAGGCAGTATCAGGAGGAGGACCTGCAACAGG
AGGAAGAGCGGCTGCAGCAGGAGGAAGAGCGGCTGCAGAGAGAAAGAAGGCGCCTGCAGCAGGAAAGGCA
GTATCAGGAGGAGGACCTGCAGCGGCTGCGGGATGAAGATCAGCGCAGGGATCTGAAATGGCAGTGGCAA
CCAAGGAAAGAAAATGAAGTTCGTAGTAACAGGCTCTTCACCAAACGCAGAGGGGATGAGGAACCCATCC
AGCAGCTGGAAGATTCTCAGGAGCGAGAGAGACGTCAGGATCGGCGGCCTCTGCAAGACGAAGAGGAAGA
GAAGAGAGAGCTGGAGCAGGAGAGGAGGCGTCGACAGCAGCGCGACCGTCAGATCCTAGAGGAAGAGCAG
TTTCAGCGAGAGCACCAACGGGAAGCCAGAAGACGAGATGAGACGTTCCAGGAGGAAGAACAGCTCCAGG
GAGAATCGAGAAGACGGCAACAGGAGAGAGAGGGCAAGTTCCTTGAGGAGGAAAGGCAGCTGCGGACAGA
ACGGGAAGAGCAGAGGCGGCGTCAAGAACAAGAGAGAGAATTCCAAGAGGAGGAGGAGCACCTCCAAGAA
CGCGAGAAAGAACTTCGGCAGGAATGCGACAGAAAATCTCGTGAACAAGAGCGCCGCCAGCAGCGTGAGG
AAGAGCAGCTGAGGCGTCAGGAGCGGGACCAGAGATTCCGTCGGGAACAAGAACGCCACCTGGAACGTGA
GGAAGAGCAGCTGCGGGACAGACCATCCCGCCGGGAACAAGAACGCCACCAGGAACGTGAGGAAGAGCAG
CTGCGGGACAGACCATCCCGCCGGGAACAAGAACGCCACCAGGAACGTGAGGAAGAGCAGCTGCGGGACA
GACCATCCCGCCGGGAACAAGAACGCCACCAGGAACGTGAGGAAGAGCAGCTGCGGGACAGACCATTCCG
CCGGGAACAAGAACGCCGCCTGGAGCGTGAGGAAGAGCAGCTGCGGGACAGACCATCCCGCCGGGAACAA
GAACGCCACCAGGAACGTGAGGAAGAGCAGCTGCGGGACAGACCATCCCGCCGGGAACAAGAACGCCGCC
TGGAGCGTGAGGAAGAGCAGCTGCGGGACAGATCATTCCGCCGGGAGCAAGAGCTCAGACGGGACAGAAA
ATTCCATGAGGAAGAAGAGCGCCGCGAGGAACTGGAGGAAGAGCAGCGTGGCCAAGAGCGGGACCGTTTG
AGGGTGGAGGAGCAGCTTCGCGGACAGCGAGAGGAAGAGCAGCGCCGCCGCCAGGAATGTGACAGAAAAT
TACACCGGGAACTAGAGGTCCGCCAGGAACTGGAGGAAGAGCGGCTGCGGGACAGAAAGCTCCGCAGGGA
ACAAGAGCTCAGGCGCGACAGAAAATTCCATGAGGAAGAAGAGCGCCGTCATGAGGAGTTCGAGGAAAAG
CAGCTGCGCCTCCAGGAACCGGACAGAAGATTCCGCCGGGAACAAGAGCTCCGTCAGGAATGCGTCGAGG
AAGAGCGGCTGCGGGACAGTAAGATCCGCCGGGAGCAAGAGCTCCGCCGGGAGCGCGAAGAAGAGCGGCT
GAGGGACAGAAAGATCCGCCGGGACCAAGAACTCCGCCAGGGACTGGAGGAAGAGCAGCTGAGGCGCCAG
GAACTTGACAGAAAATTCCGTGAGGAACAAGAGCTCGACCAAGAACTGGAGGAAGAGCGGCTGCGGGACA
GAAAGATCCGCCGGGAGCAAGAGCTCCGCCGGGAGCAAGAGCTCCGCCGGGAGCAAGAGTTCCGCCGGGA
GCAAGAGCTCCGCCGGGAGCAAGAGTTCCGCCGGGAGCAAGAGCTCCGCCAGGAGCGCGAGGAAGAGCGG
CTGAGGGACAGAAAGATCCGCCGGGACCAAGAACTCCGCCAGGGACTGGAGGAAGAGCAGCTGAGGCGCC
AGGAACGTGACAGAAAAGTCCGTGAGGAACAAGAGCTCGACCAAGAACTGGAGGAAGAGCGGCTGCGGGA
CAGAAAGATCCGCCGGGAGCAAGAGCTCCGCAGAGAGCAAGAGCTCCGCCGGGAGCAAGAGTTCCGCCGG
GAGCAAGGGCTCCGCCGGGAGCGCGAGGAAGAGCGGCTGAGGGACAGAAAGATCCGCCGGGACCAAGAAC
TCCGCCAGGGACTGGAGGAAGAGCAGCTGAGGCGCCAGGAACGTGACAGAAAATTCCGTGAGGAACAAGA
GCTCGGCCAAGAACTGGAGGAAGAGCGGCTGCGGGACAGAAAGATCCGCCGGGAGCAAGAGCTCCGCCGG
GAACGCGAGCAAGAGCAGCGGCGCCGCCTGGAGCGTGAGGAAGAGCAGCAGCGTCTCCATGAGCGTGAGG
AAGAGCAGCGGCGCCGCCAGGAGCGCGAGCAAGAGCAGCAGCGGTGCCTGGAGCGTGAGGAGGAACAATT
TCGCTTTGAGGAGCAGCAGCGCCGCCGCCAGGAACGCGAGCAACAGTTGAGACAGGAGCGCGACAGAAGA
GTCCTTGAGGAAGAAGAGCTTCGTCAGGAAAGGGAGGAGCTGCTGCACCGCCAGGTGGGTGGCAGGAAAT
TCCGGGAAGAGGAGCGACTCCGCCTGGAAAGAGAGGAACAGCAGCGTCGTCTCCAGGAGCGTGACAACAG
AAGATTCCGCGAGGAAGTAGAGCTCAGGCAAGAAAGGGAAGGGCAGCAGCTTCGCCAAGAGCGTGACAGA
AAATTCCGTGAGGTAGAAGAGCTTCGCCAGGAAGAACAGCGCCGCCGCCAGGAGCGTGACAGGAAATTCC
GGGAAGAGAAACACCCACGCGAGGAACGCGAGGAACAGCAGTTGCGCAGGGAGAAGCGAGATGGTCAATA
CCTGGCTGAGGAGCAGTTTGCCAGGGATACGATTCGTCGCCAGGAACAAGAACTACGTCAAGAAGAGGAA
CAAAGACGTCGCCAAGAGCGGGAGAGAAAATTCCAAGAAGAGCAAATCCGTCGTAGGCAAGAGGAGCAGA
GGCGCCGCCAAATCCTGGAGCCTGGTACACGCCAGTTTGCCAATGTCCCAGTGCGTTCCAGCCCTCTCTA
TGAGTACATCCAGGAGCAGAGGTCTCAATACCGCCCTTAA

Translation (1599 aa):
MSPLIRSIVDITEVFNQYASQSCDGASLSKKDLKNLLERELGDVLQRPHDPETIDLTLELLDRDCNGRVD
FNEFLLFLFKIAQACYYALDQAAELGEKRALPNEKRNLSQDRRQEDQRRFEPRSRQLDEEPGRRSWQKRR
EQEERAEEQRLEQRYRQHRDEEQRLQRRELQELEERLAEKEPLGWSKGRDAEEFSEVEEQQRQERQELKG
KGQTEERRLQKRRQEELREPLLRRDLELRREQELRREQELRQEQRREQELRREQELRQELRREQELNRRQ
ELRREQELRREQELRQELRREQELRREQELRQELRREQELRREQELRQELRREQELRREQELRQELRREQ
ELRREQELRQELAEEDELTRIREPDESITQRWQWQLENEADARQNKVYSRPSRQEQRLRQELGERQLREQ
EEQRRDLQQERPAEEARQRNQWERPQRAEERLEQEQRFRDREEQRFREEKLQRAELQDSLLDEEQRRLQE
ERREPNRSRQLREESQRRRTLYAKPSQRQRREEELREERLLQEEQRQQRERKHRREEDLQQEEKRLQQDE
EQLQRERRRLQRERQYQEEDLQQEEERLQQEEERLQRERRRLQQERQYQEEDLQRLRDEDQRRDLKWQWQ
PRKENEVRSNRLFTKRRGDEEPIQQLEDSQERERRQDRRPLQDEEEEKRELEQERRRRQQRDRQILEEEQ
FQREHQREARRRDETFQEEEQLQGESRRRQQEREGKFLEEERQLRTEREEQRRRQEQEREFQEEEEHLQE
REKELRQECDRKSREQERRQQREEEQLRRQERDQRFRREQERHLEREEEQLRDRPSRREQERHQEREEEQ
LRDRPSRREQERHQEREEEQLRDRPSRREQERHQEREEEQLRDRPFRREQERRLEREEEQLRDRPSRREQ
ERHQEREEEQLRDRPSRREQERRLEREEEQLRDRSFRREQELRRDRKFHEEEERREELEEEQRGQERDRL
RVEEQLRGQREEEQRRRQECDRKLHRELEVRQELEEERLRDRKLRREQELRRDRKFHEEEERRHEEFEEK
QLRLQEPDRRFRREQELRQECVEEERLRDSKIRREQELRREREEERLRDRKIRRDQELRQGLEEEQLRRQ
ELDRKFREEQELDQELEEERLRDRKIRREQELRREQELRREQEFRREQELRREQEFRREQELRQEREEER
LRDRKIRRDQELRQGLEEEQLRRQERDRKVREEQELDQELEEERLRDRKIRREQELRREQELRREQEFRR
EQGLRREREEERLRDRKIRRDQELRQGLEEEQLRRQERDRKFREEQELGQELEEERLRDRKIRREQELRR
EREQEQRRRLEREEEQQRLHEREEEQRRRQEREQEQQRCLEREEEQFRFEEQQRRRQEREQQLRQERDRR
VLEEEELRQEREELLHRQVGGRKFREEERLRLEREEQQRRLQERDNRRFREEVELRQEREGQQLRQERDR
KFREVEELRQEEQRRRQERDRKFREEKHPREEREEQQLRREKRDGQYLAEEQFARDTIRRQEQELRQEEE
QRRRQERERKFQEEQIRRRQEEQRRRQILEPGTRQFANVPVRSSPLYEYIQEQRSQYRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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