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Report for CCDS50970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50970.1 Public Mus musculus 3 Rps27 23 108 98 CCDS HistoryNCBI Gene:57294Re-query CCDS DB by CCDS ID:50970.1Re-query CCDS DB by GeneID:57294See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170122.3 ENSMUSP00000132102.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170122.3Link to Ensembl Protein Viewer:ENSMUSP00000132102.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170122Re-query CCDS DB by Protein ID:ENSMUSP00000132102
Original member Current member NCBI NM_027015.4 NP_081291.1 Accepted alive Link to Nucleotide Sequence:NM_027015.4Link to Protein Sequence:NP_081291.1Re-query CCDS DB by Nucleotide ID:NM_027015Re-query CCDS DB by Protein ID:NP_081291Link to BLAST:NP_081291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081291.1 84 Q6ZWU9 84 100% 0 0

Chromosomal Locations for CCDS 50970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90212725 90212753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90212934 90213044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90213193 90213301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90213610 90213615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (255 nt):
ATGCCTCTCGCAAAGGATCTCCTTCATCCCTCTCCAGAAGAGGAGAAGAGGAAACACAAGAAAAAGCGCC
TGGTGCAGAGCCCCAATTCCTACTTTATGGACGTGAAATGCCCAGGATGCTATAAAATCACCACGGTCTT
TAGCCATGCACAAACGGTAGTCTTGTGTGTTGGCTGCTCCACTGTCCTCTGTCAGCCTACAGGTGGAAAA
GCAAGGCTGACAGAAGGATGCTCCTTCAGGAGGAAGCAGCACTGA

Translation (84 aa):
MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGK
ARLTEGCSFRRKQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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