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Report for CCDS50942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50942.1 Public Mus musculus 3 Fcrl1 23 108 98 CCDS HistoryNCBI Gene:229499Re-query CCDS DB by CCDS ID:50942.1Re-query CCDS DB by GeneID:229499See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50942.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167200.6 ENSMUSP00000128235.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167200.6Link to Ensembl Protein Viewer:ENSMUSP00000128235.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167200Re-query CCDS DB by Protein ID:ENSMUSP00000128235
Original member Current member NCBI NM_001136236.1 NP_001129708.1 Accepted alive Link to Nucleotide Sequence:NM_001136236.1Link to Protein Sequence:NP_001129708.1Re-query CCDS DB by Nucleotide ID:NM_001136236Re-query CCDS DB by Protein ID:NP_001129708Link to BLAST:NP_001129708.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129708.1 300 Q8R4Y0-2 300 99.3333% 0 2

Chromosomal Locations for CCDS 50942.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87376495 87376525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87381761 87381781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87384588 87384869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87385037 87385315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87386746 87386770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87389340 87389422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87389596 87389667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87390230 87390261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87391214 87391291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGCTACCTTGGCTCCTGCTACTGATCTGTGCTCTACCGTGTGAACCTGCTGGAATCTCTGATGTGAGCT
TGAAGACACGGCCCCCAGGAGGATGGGTGATGGAGGGAGACAAGCTGGTCCTCATCTGCTCGGTTGATAG
AGTCACTGGGAATATAACTTACTTCTGGTACAGAGGGGCCCTGGGTTTCCAACTGGAAACAAAGACACAA
CCTTCACTAACAGCAGAGTTTGAGATCAGTGACATGAAGCAGAGCGATGCTGATCAATATTACTGTGCGG
CTAACGATGGCCACGACCCTATCCCCAGTGAGCTGGTGAGCATCCACGTCAGAGTTCCAGTGTCTCGCCC
TGTCCTTACGTTTGGGGACTCTGGAACCCAGGCTGTGCTAGGGGACCTGGTGGAGCTTCACTGTAAGGCC
CTGAGAGGCTCACCCCCAATCTTCTACCAGTTTTATCATGAGAGCATCATCCTGGGGAACAGTTCAGCAC
CCTCTGGAGGAGGAGCATCCTTCAACTTCTCCCTGACTGCAGAACATTCTGGAAACTTCTCCTGTGAGGC
CAGCAATGGACAGGGTGCCCAACGAAGTGAGGTGGTGGCTCTCAACTTAACAGGAAGACAATCAGAGGAT
CCAGTCAGGAGCCCTCCTCAGACTGTGCTCCAAGGATCCACCTACCCCAAACCCCCCGACTCAAGGCAGC
CAGAGCCCCTGTATGAGAACGTGAACGTTGTAAGTGGCAATGAAGTGTACTCTCTGGTGTACCACACCCC
GCAGGTGCTGGAACCAGCAGCAGCTCAGCATGTGAGGACACACGGAGTAAGTGAGTCCTTTCAGGTCTCC
TCTGGACTCTATTCTAAGCCAAGGATAAACATTGCACATATGGACTATGAAGACGCCATGTAG

Translation (300 aa):
MLPWLLLLICALPCEPAGISDVSLKTRPPGGWVMEGDKLVLICSVDRVTGNITYFWYRGALGFQLETKTQ
PSLTAEFEISDMKQSDADQYYCAANDGHDPIPSELVSIHVRVPVSRPVLTFGDSGTQAVLGDLVELHCKA
LRGSPPIFYQFYHESIILGNSSAPSGGGASFNFSLTAEHSGNFSCEASNGQGAQRSEVVALNLTGRQSED
PVRSPPQTVLQGSTYPKPPDSRQPEPLYENVNVVSGNEVYSLVYHTPQVLEPAAAQHVRTHGVSESFQVS
SGLYSKPRINIAHMDYEDAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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