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Report for CCDS50921.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50921.1 Under review, update Mus musculus 3 Vmn2r4 23 108 98 CCDS HistoryNCBI Gene:637053Re-query CCDS DB by CCDS ID:50921.1Re-query CCDS DB by GeneID:637053See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50921.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170280.2 ENSMUSP00000127513.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170280.2Link to Ensembl Protein Viewer:ENSMUSP00000127513.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170280Re-query CCDS DB by Protein ID:ENSMUSP00000127513
Original member NCBI NM_001104615.1 NP_001098085.1 Removed not alive Link to Nucleotide Sequence:NM_001104615.1Link to Protein Sequence:NP_001098085.1Re-query CCDS DB by Nucleotide ID:NM_001104615Re-query CCDS DB by Protein ID:NP_001098085Link to BLAST:NP_001098085.1
Current member NCBI NM_001385080.1 NP_001372009.1 Pending alive Link to Nucleotide Sequence:NM_001385080.1Link to Protein Sequence:NP_001372009.1Re-query CCDS DB by Nucleotide ID:NM_001385080Re-query CCDS DB by Protein ID:NP_001372009Link to BLAST:NP_001372009.1

Chromosomal Locations for CCDS 50921.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 64388621 64389603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64390947 64391070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64398365 64398595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64406155 64407024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64409782 64410048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2475 nt):
ATGAAAACCATGATCCACACCATCAAGGAGATTAATGAGAGGAAGGATATTTTGCCCAACCACACTCTGG
GCTACCAGATCTTTGACAACTGTTTCTCCATCACCAAAGCAATGGAGTCATCTTCAGTGTTTCTAACAGG
GCAGGAGGAATACAAACCTAACTGGAGAAACAGCACTGGAAAATTTCTAGTTGGAATTATTGGAGCAGGA
GGATCAACTATGTCAGTTGCTGTTTCAAGAATTGTAGGGATTCATCGTGTACCTCAGGTAGGATATGCTT
CTTCCTCCTCAATTTTTAGTAATGATTATCAATTTCCATACATTCTTCGCACAATACCCAGTGACAAGTT
CCAGTCTGAGGCCATCGTAAATCTAATTAGACACTTTGGTTGGGTCTGGGTAGGTGCTATTGCATCTGAT
GATGATTATGGAAAATATGGAGTAAAATTCTTTAGGGAAGAAATGGAGAGGGCCAACCTTTGTGTGGCTT
TCTCTGAAACCATTCCAAAAGTCTACTCCAATGAGAAAATGAAAATAGCTGTTGATGCAGTAAAGAGTTC
CACTGCCAAAGTCATTGTGCTTTATGCAACTGACATTGACCTCAGCCCCTTTGTGCTGGAAGTGATTCAT
CATAACATAACTGACAGGACATGGATAGCCACCGAAGCCTGGATTACCTCAGCTCTCATTGCAAAGCCTG
AGTACTTTCCCTATTTTGGTGGAACTATTGGATTTGCAATACCGAGAAGTGTTATACCAGGACTAAAAGA
ATTCCTTTATGATGTACACCCTAGCAAGGATCCAAATGATGTCTTGACCATTGAATTCTGGCAAACTGCT
TTTAACTGTACCTGGCCCAACAGCAGTGTGGCTTACAATGTGGACCACAGAGTGAATATGACTGGTAAAG
AAGACAGACTGTATGACATGTCTGATCAGCTCTGCACTGGAGAGGAGAAGCTGGAAGATCTGAAAAATAC
CTATCTGGATACATCTCAGCTAAGAATCACAAACAATGTCAGACAAGCTGTGTATCTTTTTGCTCATGCG
ATGGATATTTTGAGACAAGATGACATAAGAGAAGAATATAGGGAAAAGTCAGTACTTGAAAGTAAATCTA
TCCTTGATTATATAAAGGTATGGCCGTACATGAAAGAAATAAAATTCGTTACCCATGATGGAAGGAAAAT
AGAACTTGGTAGTAATGGAGATGTATTAAATGGATCTTATGATATCATCAATTGGCACATGGATAATACT
GGAGAAATAACCTTTGTCAAAGTTGGAGAATACAAATTCACACGTTCAAAATATGAATTTGTTCTTCCAA
AGAACTCAACATTATTTTGGAACACTGAATCTTCAAGGCTTCCAGATTCAGTTTGCACAAAAGTGTGTCC
TCCAGGGACTCGGAAGGGAATTCTCCAGGGACAGCCCATATGCTGCTTTGATTGCATCCCATGTACTGAT
GGATATGTGTCAGAGAAACCAGGTCAAAGGCTATGTGATCCATGTGGTGAAAATGACTGGTCCAATGCAG
AGAAGAACAAGTGTGTGCCAAAGCATGTAGAATTCCTTGCTTATGAGGAGGCCCTGGGGTTCACCCTTGT
CATCATTTCCATCTTTGGAGCTCTTGTGGTCTTGGCAGTTACTGTTGTGTATGTGATCCACAGGCACACT
CCATTGGTGAAAGCCAATGACCGGGAGCTGAGCTTCCTCATTCAGATGTCTCTGGGAATCACAGTGCTAT
CATCCATGTTGTTCATAGGCAAGCCATGCAACTGGTCCTGCAAGACCCGTCAGGTCACTCTGGCACTGGG
CTTTTGCCTTTGTTTGTCTTCCATTCTTGGAAAGACTGTTTCACTCTTTTTTGCCTACAGGATTTCCATA
TCTAAAACCCGGCTAATATCCATGCACCCCATTTTTCGTAAACTCATTGTGTTGATCTGTGTTGTAGGGG
AGATTGGTGTATGCACAGCTTACTTAGTTTTGGAGCCTCCAAGCCTGTTCAAGAACATTGAACCTCAAAA
TGTAAAGATCATCTTTGAATGCAATGAAGGTTCTATAGAGTTTCTGTGCTCCATTTTTGGGTTTGATGTT
CTTCTGGCTCTGCTGTGTTTTGCTACCACCTTTGTGGCTCGCCAGCTGCCAGATAACTATTATGAAGGGA
AATGTATCACTTTTGGGATGCTGGTCTTTTTCATTGTCTGGATCTCTTTTGTCCCTGCTTACTTGAGCAC
CAAAGGCAAATTCAATGTGGCTGTGGAAATATTTGCCATTTTGGCATCTAGCTATGGCTTGTTAGGCTGT
CTATTTCTTCCCAAGTGCTTCATTATCTTGCTGAGGCCAAAGAGGAACACTGATGAAACTGTTGGTGGAA
GAGTCCCCACTGTTGACAGGAGCATCCAGCTGACCTCAGCTTCTGTGAGCAGTGAGCTTAACAGCACCAC
GGTGTCCACTGTCCTGGATGAGTAG

Translation (824 aa):
MKTMIHTIKEINERKDILPNHTLGYQIFDNCFSITKAMESSSVFLTGQEEYKPNWRNSTGKFLVGIIGAG
GSTMSVAVSRIVGIHRVPQVGYASSSSIFSNDYQFPYILRTIPSDKFQSEAIVNLIRHFGWVWVGAIASD
DDYGKYGVKFFREEMERANLCVAFSETIPKVYSNEKMKIAVDAVKSSTAKVIVLYATDIDLSPFVLEVIH
HNITDRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTA
FNCTWPNSSVAYNVDHRVNMTGKEDRLYDMSDQLCTGEEKLEDLKNTYLDTSQLRITNNVRQAVYLFAHA
MDILRQDDIREEYREKSVLESKSILDYIKVWPYMKEIKFVTHDGRKIELGSNGDVLNGSYDIINWHMDNT
GEITFVKVGEYKFTRSKYEFVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGILQGQPICCFDCIPCTD
GYVSEKPGQRLCDPCGENDWSNAEKNKCVPKHVEFLAYEEALGFTLVIISIFGALVVLAVTVVYVIHRHT
PLVKANDRELSFLIQMSLGITVLSSMLFIGKPCNWSCKTRQVTLALGFCLCLSSILGKTVSLFFAYRISI
SKTRLISMHPIFRKLIVLICVVGEIGVCTAYLVLEPPSLFKNIEPQNVKIIFECNEGSIEFLCSIFGFDV
LLALLCFATTFVARQLPDNYYEGKCITFGMLVFFIVWISFVPAYLSTKGKFNVAVEIFAILASSYGLLGC
LFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTTVSTVLDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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