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Report for CCDS50889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50889.1 Public Mus musculus 3 Pex5l 23 108 98 CCDS HistoryNCBI Gene:58869Re-query CCDS DB by CCDS ID:50889.1Re-query CCDS DB by GeneID:58869See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50889.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108226.7 ENSMUSP00000103861.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108226.7Link to Ensembl Protein Viewer:ENSMUSP00000103861.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108226Re-query CCDS DB by Protein ID:ENSMUSP00000103861
Original member Current member NCBI NM_001163516.3 NP_001156988.1 Accepted alive Link to Nucleotide Sequence:NM_001163516.3Link to Protein Sequence:NP_001156988.1Re-query CCDS DB by Nucleotide ID:NM_001163516Re-query CCDS DB by Protein ID:NP_001156988Link to BLAST:NP_001156988.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156988.1 567 Q8C437-1 567 99.8236% 0 1

Chromosomal Locations for CCDS 50889.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 32950669 32950873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32952471 32952628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32953036 32953201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32954328 32954525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32955762 32955832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32956673 32956816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32958746 32958862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32992906 32993001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33004304 33004400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33005920 33006043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33007122 33007316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33014965 33015076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33142849 33142869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGTACCAGGGACACATGCAGCTGGTGAATGAGCAACAAGAGAGCAGACCCCTCCTGAGCCCCTCCATCG
ACGACTTCCTCTGCGAAACCAAATCGGAGGCCATTGCAAAGCCAGTGACATCCAACACAGCCGTGTTGAC
CACTGGCTTGGATCTCCTTGACCTGAGTGAACCCGTCTCTCAAACCCAAACCAAAGCCAAGAAATCTGAG
CCCTCATCAAAGAGCTCGTCCCTCAAGAAGAAAGCTGATGGCTCCGACCTCATCAGTGCAGATGCTGAGC
AGAGAGCACAGGCTCTCCGAGGGCCAGAGACATCATCCTTAGATTTAGACATTCAAACACAACTGGAAAA
ATGGGATGATGTCAAGTTTCACGGTGACCGAACAAGCAAGGGGCATCTCATGGCAGAAAGGAAATCATGC
TCTTCCAGAACTGGGTCCAAAGAGCTTCTTTGGTCCGCAGAACACAGATCTCAGCCAGAGCTGAGTACTG
GGAAAAGCGCCCTCAACTCTGAGTCGGCTTCCGAGTTGGAACTTGTAGCTCCAGCACAGGCTCGGCTGAC
CAAAGAGCATCGCTGGGGAAGTGCCCTGCTCTCCAGGAACCATTCCTTGGAAGAGGAGTTTGAAAGGGCA
AAAGCGGCAGTAGAGTCAGATACAGAGTTCTGGGATAAGATGCAGGCAGAATGGGAGGAAATGGCCCGGA
GGAACTGGATATCCGAGAACCAGGAAGCTCAGAACCAAGTCACCGTCTCGGCCAGTGAGAAGGGATATTA
CTTCCACACTGAAAATCCCTTCAAGGACTGGCCTGGAGCATTTGAAGAAGGCTTAAAAAGGTTGAAGGAA
GGGGACCTGCCTGTCACCATCCTGTTCATGGAAGCTGCAATTCTTCAGGACCCTGGAGACGCTGAGGCAT
GGCAGTTTCTTGGTATAACCCAGGCTGAGAATGAAAATGAGCAGGCAGCTATTGTCGCCCTCCAGAGGTG
CCTGGAGTTGCAGCCCAACAACTTGAAGGCTCTGATGGCCTTGGCTGTAAGTTACACCAACACCAGCCAC
CAGCAGGATGCTTGTGAGGCACTGAAGAACTGGATTAAGCAAAACCCAAAGTACAAGTACCTTGTGAAGA
ACAAGAAAGGCTCTCCAGGCCTCACACGGCGGATGTCTAAATCCCCAGTTGACAGCTCTGTTCTGGAAGG
AGTGAAGGAGTTGTACCTGGAAGCTGCCCACCAAAATGGTGACATGATTGACCCAGACCTGCAGACAGGT
CTGGGAGTTCTGTTCCACCTGAGTGGAGAGTTCAATAGAGCAATCGATGCATTTAATGCTGCCTTAACAG
TTCGGCCAGAGGATTACTCACTGTGGAACCGTCTTGGGGCAACCTTGGCAAATGGAGACCGCAGTGAGGA
AGCTGTGGAGGCCTACACGAGAGCACTGGAGATCCAGCCAGGTTTCATCCGCTCCAGATACAACCTGGGG
ATCAGCTGCATCAACCTGGGTGCCTACAGAGAAGCGGTCAGCAACTTCCTCACTGCCCTCAGCTTGCAGA
GGAAGAGCAGGAACCAGCAGCAAGTCCCTCACCCTGCCATCTCCGGGAACATCTGGGCCGCCCTCAGGAT
TGCCCTGTCGCTGATGGACCAGCCGGAGCTCTTCCAGGCCGCCAACCTCGGTGACTTGGATGTCCTCCTG
AGAGCTTTCAATTTGGATCCTTGA

Translation (567 aa):
MYQGHMQLVNEQQESRPLLSPSIDDFLCETKSEAIAKPVTSNTAVLTTGLDLLDLSEPVSQTQTKAKKSE
PSSKSSSLKKKADGSDLISADAEQRAQALRGPETSSLDLDIQTQLEKWDDVKFHGDRTSKGHLMAERKSC
SSRTGSKELLWSAEHRSQPELSTGKSALNSESASELELVAPAQARLTKEHRWGSALLSRNHSLEEEFERA
KAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKE
GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH
QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG
LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG
ISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLL
RAFNLDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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