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Report for CCDS50888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50888.1 Public Mus musculus 3 Pex5l 23 108 98 CCDS HistoryNCBI Gene:58869Re-query CCDS DB by CCDS ID:50888.1Re-query CCDS DB by GeneID:58869See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50888.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108221.1 ENSMUSP00000103856.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108221.1Link to Ensembl Protein Viewer:ENSMUSP00000103856.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108221Re-query CCDS DB by Protein ID:ENSMUSP00000103856
Original member Current member NCBI NM_001163517.3 NP_001156989.1 Accepted alive Link to Nucleotide Sequence:NM_001163517.3Link to Protein Sequence:NP_001156989.1Re-query CCDS DB by Nucleotide ID:NM_001163517Re-query CCDS DB by Protein ID:NP_001156989Link to BLAST:NP_001156989.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156989.1 344 Q8C437-4 344 100% 0 0

Chromosomal Locations for CCDS 50888.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 32950669 32950873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32952471 32952628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32953036 32953201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32954328 32954525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32955762 32955832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32956673 32956816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32958746 32958838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGCAGGCAGAATGGGAGGAAATGGCCCGGAGGAACTGGATATCCGAGAACCAGGAAGCTCAGAACCAAG
TCACCGTCTCGGCCAGTGAGAAGGGATATTACTTCCACACTGAAAATCCCTTCAAGGACTGGCCTGGAGC
ATTTGAAGAAGGCTTAAAAAGGTTGAAGGAAGGGGACCTGCCTGTCACCATCCTGTTCATGGAAGCTGCA
ATTCTTCAGGACCCTGGAGACGCTGAGGCATGGCAGTTTCTTGGTATAACCCAGGCTGAGAATGAAAATG
AGCAGGCAGCTATTGTCGCCCTCCAGAGGTGCCTGGAGTTGCAGCCCAACAACTTGAAGGCTCTGATGGC
CTTGGCTGTAAGTTACACCAACACCAGCCACCAGCAGGATGCTTGTGAGGCACTGAAGAACTGGATTAAG
CAAAACCCAAAGTACAAGTACCTTGTGAAGAACAAGAAAGGCTCTCCAGGCCTCACACGGCGGATGTCTA
AATCCCCAGTTGACAGCTCTGTTCTGGAAGGAGTGAAGGAGTTGTACCTGGAAGCTGCCCACCAAAATGG
TGACATGATTGACCCAGACCTGCAGACAGGTCTGGGAGTTCTGTTCCACCTGAGTGGAGAGTTCAATAGA
GCAATCGATGCATTTAATGCTGCCTTAACAGTTCGGCCAGAGGATTACTCACTGTGGAACCGTCTTGGGG
CAACCTTGGCAAATGGAGACCGCAGTGAGGAAGCTGTGGAGGCCTACACGAGAGCACTGGAGATCCAGCC
AGGTTTCATCCGCTCCAGATACAACCTGGGGATCAGCTGCATCAACCTGGGTGCCTACAGAGAAGCGGTC
AGCAACTTCCTCACTGCCCTCAGCTTGCAGAGGAAGAGCAGGAACCAGCAGCAAGTCCCTCACCCTGCCA
TCTCCGGGAACATCTGGGCCGCCCTCAGGATTGCCCTGTCGCTGATGGACCAGCCGGAGCTCTTCCAGGC
CGCCAACCTCGGTGACTTGGATGTCCTCCTGAGAGCTTTCAATTTGGATCCTTGA

Translation (344 aa):
MQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAA
ILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK
QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNR
AIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV
SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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