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Report for CCDS50800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50800.1 Public Mus musculus 2 Stau1 23 108 98 CCDS HistoryNCBI Gene:20853Re-query CCDS DB by CCDS ID:50800.1Re-query CCDS DB by GeneID:20853See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50800.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109235.7 ENSMUSP00000104858.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109235.7Link to Ensembl Protein Viewer:ENSMUSP00000104858.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109235Re-query CCDS DB by Protein ID:ENSMUSP00000104858
Original member Current member NCBI NM_001109905.2 NP_001103375.1 Accepted alive Link to Nucleotide Sequence:NM_001109905.2Link to Protein Sequence:NP_001103375.1Re-query CCDS DB by Nucleotide ID:NM_001109905Re-query CCDS DB by Protein ID:NP_001103375Link to BLAST:NP_001103375.1

Chromosomal Locations for CCDS 50800.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 166949344 166949359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166949744 166949829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166950231 166950353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166950781 166951100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166951271 166951346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166952326 166952472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166953208 166953351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166954900 166955112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166960023 166960121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166963429 166963594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166964579 166964658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGTATAAGCCCGTGGACCCTCACTCTCGGATGCAGTCCACCTACAGCTATGGCATGCGTGGAGGTGCCT
ATCCCCCCAGATACTTTTACCCATTTCCAGTCCCACCTTTACTCTACCAAGTTGAGCTCTCCGTGGGCGG
ACAGCAGTTTAATGGGAAAGGAAAGATGAGACCACCCGTGAAACACGATGCCCCTGCCCGTGCGCTGAGG
ACTCTGCAGAGTGAACCCCTGCCAGAAAGGTTGGAGGTAAATGGAAGAGAAGCAGAGGAAGAAAACCTCA
ATAAATCGGAAATAAGCCAAGTGTTTGAAATTGCGCTGAAGCGGAATTTGCCTGTGAATTTTGAGGTGGC
CCGGGAGAGTGGCCCACCACACATGAAGAACTTTGTGACCAGGGTTTCAGTTGGGGAATTTGTAGGGGAA
GGAGAAGGGAAAAGCAAGAAGATCTCCAAGAAGAATGCGGCCAGGGCTGTTCTGGAGCAGCTTAGGAGGC
TGCCACCCCTCCCTGCTGTGGAGCGAGTGAAGCCCAGAATCAAGAAGAAAAGTCAGCCCACCTGCAAGCT
ACAGACAGCCCCGGATTATGGCCAAGGGATGAATCCTATTAGTAGACTTGCACAGATCCAGCAGGCAAAA
AAGGAGAAGGAGCCAGAGTACATGCTCCTTACAGAACGAGGTCTTCCACGTCGCAGGGAGTTTGTGATGC
AGGTAAAGGTTGGGCATCACACTGCAGAAGGAGTGGGTACCAATAAGAAGGTGGCCAAGCGTAATGCTGC
TGAGAACATGCTGGAGATCCTGGGGTTCAAAGTTCCCCAGGCGCAGCCTGCCAAGCCAGCACTCAAATCA
GAAGAGAAGACTCCAGTAAAGAAACCAGGAGACGGAAGGAAAGTAACGTTTTTTGAACCTAGCCCTGGGG
ATGAAAATGGAACTAGTAACAAGGACGAGGAGTTCAGGATGCCTTATCTTAGCCATCAGCAGCTGCCAGC
TGGAATTCTCCCCATGGTGCCGGAAGTTGCCCAGGCTGTCGGGGTTAGTCAAGGACACCACACCAAAGAT
TTCACCAGGGCAGCTCCAAATCCTGCCAAGGCAACGGTAACTGCCATGATAGCCCGAGAGTTGTTGTACG
GGGGCACCTCGCCCACAGCCGAGACCATTTTAAAGAGTAACATCTCTTCAGGCCACGTACCCCATGGACC
TCGCACTAGACCCTCTGAGCAACTGTACTACCTTTCCAGAGCCCAGGGATTCCAGGTTGAATACAAAGAT
TTTCCCAAGAACAACAAGAACGAGTGTGTATCTCTCATCAACTGCTCCTCACAGCCGCCTCTCGTCAGTC
ATGGCATCGGCAAGGATGTGGAGTCCTGTCATGATATGGCTGCACTGAACATTTTAAAGCTGCTGTCTGA
GTTGGACCAACAGAGCACAGAGATGCCAAGAACAGGAAATGGACCAGTTTCAGCGTGCGGGAGGTGCTGA

Translation (489 aa):
MYKPVDPHSRMQSTYSYGMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGKGKMRPPVKHDAPARALR
TLQSEPLPERLEVNGREAEEENLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGEFVGE
GEGKSKKISKKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQGMNPISRLAQIQQAK
KEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGVGTNKKVAKRNAAENMLEILGFKVPQAQPAKPALKS
EEKTPVKKPGDGRKVTFFEPSPGDENGTSNKDEEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHHTKD
FTRAAPNPAKATVTAMIARELLYGGTSPTAETILKSNISSGHVPHGPRTRPSEQLYYLSRAQGFQVEYKD
FPKNNKNECVSLINCSSQPPLVSHGIGKDVESCHDMAALNILKLLSELDQQSTEMPRTGNGPVSACGRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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