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Report for CCDS50778.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50778.1 Public Mus musculus 2 Cnbd2 23 108 98 CCDS HistoryNCBI Gene:70873Re-query CCDS DB by CCDS ID:50778.1Re-query CCDS DB by GeneID:70873See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50778.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037096.8 ENSMUSP00000041268.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037096.8Link to Ensembl Protein Viewer:ENSMUSP00000041268.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000037096Re-query CCDS DB by Protein ID:ENSMUSP00000041268
Original member Current member NCBI NM_027585.2 NP_081861.2 Accepted alive Link to Nucleotide Sequence:NM_027585.2Link to Protein Sequence:NP_081861.2Re-query CCDS DB by Nucleotide ID:NM_027585Re-query CCDS DB by Protein ID:NP_081861Link to BLAST:NP_081861.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081861.2 673 Q9D5U8-1 673 100% 0 0

Chromosomal Locations for CCDS 50778.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156312533 156312799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156320010 156320063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156328318 156328455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156333579 156333632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156335250 156335413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156338575 156338731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156339131 156339282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156341602 156341740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156353195 156353309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156365119 156365296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156367557 156367677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156373646 156373809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156375296 156375614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2022 nt):
ATGAACCGATCCGCGAATCCGGAAGCCGCCTCCTCTACCAGTCACGTGAAGTTTGATCTGGGGAAGTCCG
TAGACATCAGCTCTACTGACACTAAGGATGGCGGCACTGCAAGGTCCCCATTGGAGCCGGCGGACAAGTC
GGACACGACAGAGTCGAAATCTGAGTCGGGATCGGATTCCAGATCAGAGGAAGACAAGGAGAGTCCGGCC
TCGATTAAGGAGATAAAGGCGGAGACACCCCAACCGAAGGACCGCCCTGGCGTGCAGATTAAGCTCTCAT
GGTCACAGAAGATAAAGAGCTGGACAGCAAAAAAGAAAAGAAAACTGTACCAGCTCGTCATAGACATCAT
CATGATGAACCGAGTGTGTAAGATGTTCCGTCAAGGCCTCAGGGGATTTCGGGAATATCAGATCATTGAG
CCTGTTCACAAGAAGCATCCTGACTTCTCCTTCTGGGATAAAAAGAAGCAAGGCCGTATCTCGTTTGTTA
CCGAGGACTTTGCTGCACAGGAGGGTCACTTCCCTCCGAGGGCCATTTCTATCACACAGAAGAAGCCATC
CTGGAGGACCCACCAGGAGATCCAAGACCTCTGCAATATTCTTCAGGCTCTAGATTGCTACCGCAGCTAC
ACAGAGTCTCTACAGCTGCTCCTGGCCAAGGTCATACGCTTTGAAAGGTTCGGTCGCCGGCGCGTCATCG
TCAAGAAGGGGCAGATGGGCAATAGCTTTTATTTCATCTACCTGGGCACAGTGGCCATAACTGAGGACGA
GGATGGGAGCAGTGCTTTCCTGGACCCTCACCCAACACTGCTGCACAGGGGTGGCTCCTTCGGGGAAATG
GGCCTTCTAAGCACCACAGTAAGGAGTGCCACGGTGGTCTGCATGGAGGAGACAGAGTTCCTGGTGGTCG
ACAGAGAGGATTTCGTTGCAAATAAGCTGGGTGACGAAGTTCAGAAGGAAACTCAGTATCGGTACAACTT
TTTTAGGAACTTGGACATATTCCAGTCTTGGTCTGAAGAGAAGCTCTGGAAGCTGGTGGCCTTGGGGAGG
ATAGAGAGGTTCTCATACGGACAGATGGTGTCTAAAGACTTTATGAATTCGGCATTCATCACATTTATCT
GCCAGGGCAACTGTGAAATCCTGCGATTGGTAGCCCTGGGCGACTGCAGTGCCTATTACAAGTGGGTCTG
GCAGCAACTGGAGCTGCTGGATCACAAACCTCTGAGAATTCATGACAATGAAATATCTCCAAAGGAGAGA
TTTAAGGAACTCCAGATCAAATCCTATCCTCTGCAGGATTTCACGTATTTGAAACTTCTGCGTCTCCAGA
AAGCCAGAGAGCAACAGGGAATAGACTTCCACGGCAAGATCAACAAAGTAGAAAACACTCTCCCCAAGTT
GCTGGGCCCAAAGATCAAATCCAGGTTCGGTCATCTAGTCAAATGTTCCATGGTCAACACCAAGTTTGGT
GAACTCCCCAAGGAGGCCATAGTGGGGGTCTACATGAAGATCCACAAGACAGAGGAAGGAGAGATTGTGG
GCCTTCACCAGGCCTTTGTCCCGGAAATCCAGCGAGATTGCCGGCCCTTCATCCTTCTGAGTTTGGGATC
AGAGTTGATACAAGTAAGAAAAGAGAAGTTTTATGACATGGTTGACGAGGAGACAAGAGCAAAGATAATA
AAGATGGATGTGGACTATCCCAGCGATGAAGACCTGTGCCAGAGTTTCCTGAAGGAAAACGACTATATTG
TCTTTCGGAAGGATTTGCTGCGGTTACTGGTGGAGCCCCTCAATAAGTCACCATTCATCCCAGTCCAGAC
CAAGAAGAAAGAGATCTACAACCACAAGTCTTTGTTCCTGGATCTGTGCAGCCTTGAAAAGAAGGTGAAG
CAGCACTATCCCATTTTTCTGGCGCCCCAGAAATACCTGCCCCCCTTGAGGGTTGTCCAAGCCATCTCAG
CACCCCGGCACAAAATCCAAGAACTCCTGCCTCAATATAAGAATGCAGGGGTCCTTATTTAG

Translation (673 aa):
MNRSANPEAASSTSHVKFDLGKSVDISSTDTKDGGTARSPLEPADKSDTTESKSESGSDSRSEEDKESPA
SIKEIKAETPQPKDRPGVQIKLSWSQKIKSWTAKKKRKLYQLVIDIIMMNRVCKMFRQGLRGFREYQIIE
PVHKKHPDFSFWDKKKQGRISFVTEDFAAQEGHFPPRAISITQKKPSWRTHQEIQDLCNILQALDCYRSY
TESLQLLLAKVIRFERFGRRRVIVKKGQMGNSFYFIYLGTVAITEDEDGSSAFLDPHPTLLHRGGSFGEM
GLLSTTVRSATVVCMEETEFLVVDREDFVANKLGDEVQKETQYRYNFFRNLDIFQSWSEEKLWKLVALGR
IERFSYGQMVSKDFMNSAFITFICQGNCEILRLVALGDCSAYYKWVWQQLELLDHKPLRIHDNEISPKER
FKELQIKSYPLQDFTYLKLLRLQKAREQQGIDFHGKINKVENTLPKLLGPKIKSRFGHLVKCSMVNTKFG
ELPKEAIVGVYMKIHKTEEGEIVGLHQAFVPEIQRDCRPFILLSLGSELIQVRKEKFYDMVDEETRAKII
KMDVDYPSDEDLCQSFLKENDYIVFRKDLLRLLVEPLNKSPFIPVQTKKKEIYNHKSLFLDLCSLEKKVK
QHYPIFLAPQKYLPPLRVVQAISAPRHKIQELLPQYKNAGVLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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