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Report for CCDS50750.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50750.1 Public Mus musculus 2 Scrt2 23 108 98 CCDS HistoryNCBI Gene:545474Re-query CCDS DB by CCDS ID:50750.1Re-query CCDS DB by GeneID:545474See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50750.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064061.3 ENSMUSP00000066280.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064061.3Link to Ensembl Protein Viewer:ENSMUSP00000066280.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000064061Re-query CCDS DB by Protein ID:ENSMUSP00000066280
Original member NCBI NM_001160410.1 NP_001153882.1 Updated not alive Link to Nucleotide Sequence:NM_001160410.1Link to Protein Sequence:NP_001153882.1Re-query CCDS DB by Nucleotide ID:NM_001160410Re-query CCDS DB by Protein ID:NP_001153882
Current member NCBI NM_001160410.2 NP_001153882.1 Accepted alive Link to Nucleotide Sequence:NM_001160410.2Link to Protein Sequence:NP_001153882.1Re-query CCDS DB by Nucleotide ID:NM_001160410Re-query CCDS DB by Protein ID:NP_001153882Link to BLAST:NP_001153882.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153882.1 311 Q8BTH6 311 100% 0 0

Chromosomal Locations for CCDS 50750.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152082050 152082182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152093062 152093864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGCCGCGTTCCTTCCTGGTGAAGAAGATCAAAGCGGATGGCTTCCAGTGCAGCGGGGTGTCAGCCCCCA
CCTACCACCCCCTGGAGACTGCCTACGTGCTGCCTGGCACCCGCGGGCCTCCGGGGGACAACGGTTATGT
GGCGCACTGTCTGCCCCCCAGCGGTTACGATGGCGAGCAGAAGCCTGGGCTGGAGCTGGCGCCCGCCGAG
CCCGCCTACCCGGCCGCGGCGTCCGAAGAGTACAGCGACCCCGAGAGCCCACAGTCCAGCCTGTCGGCGC
GCTACTTCCGCGGGGAGGCGGCCGTGACCGACAGCTACTCCATGGACGCCTTCTTCATCTCTGACGGGCG
TTCGCGGCGGCGCCGGGCCGGGGCTGGCGGGGACGCGGCGGGCGCAGGGGACGCGGGCGGCGGCGGCGGT
GGCGGCGGCGGCGGGGAGCGCGCGGGGCGCTCGGGGGCGACGGCGGGAGGCGGGCACCGGCACGCATGCG
CAGAGTGCGGCAAGACGTACGCCACGTCGTCGAACCTGAGCCGCCACAAGCAGACGCACCGCAGCCTGGA
CAGCCAGCTGGCGCGCAAGTGCCCGACGTGCGGCAAGGCCTACGTGTCCATGCCCGCGCTCGCCATGCAC
GTGCTCACGCACAACCTGCGCCACAAGTGCGGCGTGTGCGGCAAGGCCTTCTCCCGGCCCTGGCTGCTCC
AGGGCCACATGCGCTCGCACACCGGCGAGAAGCCCTTCGGCTGCGCGCACTGCGGCAAAGCCTTCGCCGA
CCGCTCCAACCTGCGCGCGCACATGCAGACGCACTCGGCCTTCAAGCACTACCGCTGCCGCCAGTGCGAC
AAGAGCTTCGCGCTCAAGTCCTACCTCCACAAGCACTGCGAGGCTGCGTGCGTCAAGGCCGCCGAGCCGC
CGCCTTCCGCCGGCCCGGCCAGTTGA

Translation (311 aa):
MPRSFLVKKIKADGFQCSGVSAPTYHPLETAYVLPGTRGPPGDNGYVAHCLPPSGYDGEQKPGLELAPAE
PAYPAAASEEYSDPESPQSSLSARYFRGEAAVTDSYSMDAFFISDGRSRRRRAGAGGDAAGAGDAGGGGG
GGGGGERAGRSGATAGGGHRHACAECGKTYATSSNLSRHKQTHRSLDSQLARKCPTCGKAYVSMPALAMH
VLTHNLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCD
KSFALKSYLHKHCEAACVKAAEPPPSAGPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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