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Report for CCDS50589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50589.1 Public Mus musculus 2 Wdsub1 23 108 98 CCDS HistoryNCBI Gene:72137Re-query CCDS DB by CCDS ID:50589.1Re-query CCDS DB by GeneID:72137See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50589.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102751.8 ENSMUSP00000099812.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102751.8Link to Ensembl Protein Viewer:ENSMUSP00000099812.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000102751Re-query CCDS DB by Protein ID:ENSMUSP00000099812
Original member Current member NCBI NM_001159636.1 NP_001153108.1 Accepted alive Link to Nucleotide Sequence:NM_001159636.1Link to Protein Sequence:NP_001153108.1Re-query CCDS DB by Nucleotide ID:NM_001159636Re-query CCDS DB by Protein ID:NP_001153108Link to BLAST:NP_001153108.1

Chromosomal Locations for CCDS 50589.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 59855271 59855275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59858610 59858750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59861561 59861737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59862620 59862726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59862817 59862857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59864302 59864335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59873216 59873309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59874239 59874328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59876667 59876851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59878130 59878527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGTGAGGCTGATTCACACGCTGGCTGATCACGGTGATGACGTCAGCTGCTGCGCCTTCTCGGCTGCCC
TCCTGGCCACCTGCTCCTTGGACAAGACCATCCGCCTGTACTCCCTAAGTGACTTTGCTGAACTGCCGTA
CTCCCCGCTGAAGTTCCACACCTATGCTGTCCACTGCTGCTGTTTCTCACCCTCAGGACACGTTTTAGCA
TCGTGCTCGACAGACGGGACCACGGTGCTGTGGAGCTCGCACAGCGGACACACCCTGACCGTGTTGGAGC
AGCCGGGTGGCAGCCCTGTGCGCGTCTGTTGCTTTTCCCCAGACTCTGCCTACCTAGCGTCAGGGGCTGC
CGATGGATCCATTGCTTTGTGGAATGCACAGACATACAAACTATATAGGTGTGGTAGTGTCAAGGATAGC
TCATTGGTGGCCTGTGCGTTTTCTCCCGATGGAGGCCTCTTTGTCACTGGCTCCTCGGGCGGGGACTTGA
CAGTGTGGGATGACAGAATGAGGTGTCTACACAGCGAGAAGGCGCACGATCTCGGGATCACCTGCTGCAG
CTTTTCCTCACAGCCTCTCTCTGGCGGAGAAGGCCTCCAGTCTTACCAGTTGGCGTCATGTGGTCAAGAC
TGTGAAATCAAACTCTGGGCTGTTACTATTACCCGTGTCTTAGGCTTTGAATTAAAATATAAAAGCACAC
TAAGTGGGCACTGCGCCCCTGTTCTGGCCTGTGCTTTTTCACATGATGGAAAGATGCTTGCATCGGGGTC
AGTGGATAAATCTGTCATCATACATGGTATCGGCCCTCAGAGTGTGCTACACACGCTGACTCAGCATACC
AGGTATGTTACGACTTGTGCGTTTGCACCCAACACTCTCTTACTTGCTACTGGTTCAATGGACAAGACAG
TGAACATTTGGCAGTTTGACCTGGAAACACCTTGCCAAGGAAGCATGAACGACCCGCTGAAACATTTCAC
TGAAGAATGGTCAGAGGAGGATGTCTCCGTGTGGCTTCGTGCTCAAGGCTTGGAAGACCTCGTCGGTATT
TTCAGGGCAAACAACATCGATGGGAAAGAACTATTGCATCTCACAAAGGAAAGTCTGGCTGGTGATTTGA
AAATCGAATCTCTAGGGCTGCGCAGCAAAGTCCTGAGGAGTATTGAAGAGCTCAGGGCCAAGATGGATTC
CCTCTCTTCCGGAATCCCTGACGAGTTCATCTGCCCAATAACCAGAGAACTCATGAAGGACCCCGTCATC
GCATCAGGGTAA

Translation (423 aa):
MVRLIHTLADHGDDVSCCAFSAALLATCSLDKTIRLYSLSDFAELPYSPLKFHTYAVHCCCFSPSGHVLA
SCSTDGTTVLWSSHSGHTLTVLEQPGGSPVRVCCFSPDSAYLASGAADGSIALWNAQTYKLYRCGSVKDS
SLVACAFSPDGGLFVTGSSGGDLTVWDDRMRCLHSEKAHDLGITCCSFSSQPLSGGEGLQSYQLASCGQD
CEIKLWAVTITRVLGFELKYKSTLSGHCAPVLACAFSHDGKMLASGSVDKSVIIHGIGPQSVLHTLTQHT
RYVTTCAFAPNTLLLATGSMDKTVNIWQFDLETPCQGSMNDPLKHFTEEWSEEDVSVWLRAQGLEDLVGI
FRANNIDGKELLHLTKESLAGDLKIESLGLRSKVLRSIEELRAKMDSLSSGIPDEFICPITRELMKDPVI
ASG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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