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Report for CCDS50582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50582.1 Public Mus musculus 2 Orc4 23 108 98 CCDS HistoryNCBI Gene:26428Re-query CCDS DB by CCDS ID:50582.1Re-query CCDS DB by GeneID:26428See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090976.9 ENSMUSP00000088497.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090976.9Link to Ensembl Protein Viewer:ENSMUSP00000088497.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000090976Re-query CCDS DB by Protein ID:ENSMUSP00000088497
Original member NCBI NM_001177313.1 NP_001170784.1 Updated not alive Link to Nucleotide Sequence:NM_001177313.1Link to Protein Sequence:NP_001170784.1Re-query CCDS DB by Nucleotide ID:NM_001177313Re-query CCDS DB by Protein ID:NP_001170784
Current member NCBI NM_001177313.2 NP_001170784.1 Accepted alive Link to Nucleotide Sequence:NM_001177313.2Link to Protein Sequence:NP_001170784.1Re-query CCDS DB by Nucleotide ID:NM_001177313Re-query CCDS DB by Protein ID:NP_001170784Link to BLAST:NP_001170784.1

Chromosomal Locations for CCDS 50582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 48932559 48932597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48933080 48933165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48933550 48933622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48936772 48936862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48937452 48937528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48940333 48940383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (417 nt):
ATGAGCAGTCGTAAAACCAAGAGTAATGCACATGCAGAGTGTCTTTCACAGGTACAAAGAATTTTACGTG
AAAGATTTTGTCATCATAGTCCACATAGCAACCTCTTTGGAGTGCAAGTACAATACAAGCATTTGATTGA
GCTACTCAAAAGAACTGCTATCTATGGAGAAAGCAATTCTGTACTCATTGTTGGACCACGAGGATCAGGA
AAGACCACATTATTAAATCATGCTTTGAAAGAACTCATGGAAATAGAAGTGAGTGAAAATGTGATACAAG
TTCACTTAAATGGACTCCTGCAGACAAATGAAAAAATTGCTCTGAAAGAGATCACAAGACAATTAAATCT
AGACAATGTAGTTGAAGATAAAGTTTTTGGTATGCTGGTGTGCCTTGAAGTCTCAAAGTACCGATAG

Translation (138 aa):
MSSRKTKSNAHAECLSQVQRILRERFCHHSPHSNLFGVQVQYKHLIELLKRTAIYGESNSVLIVGPRGSG
KTTLLNHALKELMEIEVSENVIQVHLNGLLQTNEKIALKEITRQLNLDNVVEDKVFGMLVCLEVSKYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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