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Report for CCDS50521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50521.1 Public Mus musculus 2 Arrdc1 23 108 98 CCDS HistoryNCBI Gene:215705Re-query CCDS DB by CCDS ID:50521.1Re-query CCDS DB by GeneID:215705See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50521.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028349.13 ENSMUSP00000028349.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028349.13Link to Ensembl Protein Viewer:ENSMUSP00000028349.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028349Re-query CCDS DB by Protein ID:ENSMUSP00000028349
Original member Current member NCBI NM_001162485.1 NP_001155957.1 Accepted alive Link to Nucleotide Sequence:NM_001162485.1Link to Protein Sequence:NP_001155957.1Re-query CCDS DB by Nucleotide ID:NM_001162485Re-query CCDS DB by Protein ID:NP_001155957Link to BLAST:NP_001155957.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155957.1 434 Q99KN1-1 434 100% 0 0

Chromosomal Locations for CCDS 50521.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 24925606 24925676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24925756 24926194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24926272 24926448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24926545 24926727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24926878 24927032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24927126 24927176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24927729 24927839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24935028 24935145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGGGGAGGGTGCAGCTCTTCGAGATCCGCCTGAGTCAGGGCCGCGTCGTCTACGGTCCTGGGGAGCCGC
TGGCTGGGACCGTGCACTTGCGCCTGGGAGCGCCACTGCCCTTCCGAGCTATCCGGGTGACCTGCATGGG
TTCCTGTGGGGTCTCCACCAAGGCCAACGATGGGGCATGGGTGGTGGAGGAGAGCTACTTCAACAGCTCC
CTGTCACTGGCTGACAAGGGAAGTCTGCCGGCTGGAGAGCACAACTTCCCTTTTCAGTTCCTGCTTCCTG
CCACAGCACCCACATCTTTTGAGGGACCCTTTGGGAAGATTGTACACCAGGTGAGGGCGTCCATCGACAC
TCCACGTTTTTCCAAGGATCACAAATGTAGCCTCGTGTTCTACATCCTGAGCCCCTTGAACCTGAACAGC
ATCCCAGATATTGAGCAACCCAATGTGGCCTCCACTACCAAGAAGTTCTCCTATAAGCTGGTGAAGACTG
GCAATGTGGTTCTCACAGCTAGCACTGACCTTCGTGGCTATGTGGTGGGACAGGTGCTGCGGCTGCAGGC
TGACATTGAGAACCAGTCAGGCAAGGACACCAGCCCTGTGGTGGCCAGCTTGCTACAGAAGGTATCCTAT
AAGGCCAAGCGCTGGATCTATGATGTGCGGACCATTGCAGAGGTGGAGGGTACAGGTGTCAAGGCCTGGA
GGCGTGCTCAGTGGCAAGAACAGATCCTGGTGCCTGCCCTGCCCCAGTCAGCCCTGCCTGGCTGCAGCCT
TATCCATATCGACTATTACCTTCAGGTCTCCATGAAGGCACCTGAGGCCACCGTGACTCTCCCACTATTT
GTTGGCAATATTGCTGTGAACCAAACTCCACTGAGTCCCTGTCCAGGCCGAGAGTCTTCTCCTGGGACCC
TATCCCTAGTGGTGCCCTCTGCACCACCCCAGGAAGAGGCTGAGGCAGTGGCTAGTGGCCCTCACTTCTC
AGACCCAGTTTCTCTCTCCACCAAGAGCCACTCTCAGCAGCAGCCACTGTCGGCTCCCTTGGGTTCTGTG
TCTGTCACCACCACTGAGCCCTGGGTTCAGGTTGGAAGCCCTGCTAGACATTCTCTGCACCCTCCCTTGT
GCATCTCTATAGGTGCCACTGTCCCCTACTTTGCAGAAGGCTCTGCGGGCCCAGTACCCACCACCAGCGC
CTTGATCCTCCCTCCAGAGTACAGTTCATGGGGCTACCCCTATGAGGCCCCGCCGTCCTATGAGCAGAGC
TGTGGTGCTGCTGGTACAGACCTTGGCCTGATCCCAGGAAGCTGA

Translation (434 aa):
MGRVQLFEIRLSQGRVVYGPGEPLAGTVHLRLGAPLPFRAIRVTCMGSCGVSTKANDGAWVVEESYFNSS
LSLADKGSLPAGEHNFPFQFLLPATAPTSFEGPFGKIVHQVRASIDTPRFSKDHKCSLVFYILSPLNLNS
IPDIEQPNVASTTKKFSYKLVKTGNVVLTASTDLRGYVVGQVLRLQADIENQSGKDTSPVVASLLQKVSY
KAKRWIYDVRTIAEVEGTGVKAWRRAQWQEQILVPALPQSALPGCSLIHIDYYLQVSMKAPEATVTLPLF
VGNIAVNQTPLSPCPGRESSPGTLSLVVPSAPPQEEAEAVASGPHFSDPVSLSTKSHSQQQPLSAPLGSV
SVTTTEPWVQVGSPARHSLHPPLCISIGATVPYFAEGSAGPVPTTSALILPPEYSSWGYPYEAPPSYEQS
CGAAGTDLGLIPGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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