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Report for CCDS50514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50514.1 Public Mus musculus 2 Acbd5 23 108 98 CCDS HistoryNCBI Gene:74159Re-query CCDS DB by CCDS ID:50514.1Re-query CCDS DB by GeneID:74159See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50514.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114526.8 ENSMUSP00000110172.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114526.8Link to Ensembl Protein Viewer:ENSMUSP00000110172.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114526Re-query CCDS DB by Protein ID:ENSMUSP00000110172
Original member Current member NCBI NM_001102438.1 NP_001095908.1 Accepted alive Link to Nucleotide Sequence:NM_001102438.1Link to Protein Sequence:NP_001095908.1Re-query CCDS DB by Nucleotide ID:NM_001102438Re-query CCDS DB by Protein ID:NP_001095908Link to BLAST:NP_001095908.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001095908.1 508 Q5XG73-1 508 100% 0 0

Chromosomal Locations for CCDS 50514.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 23069270 23069284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23069451 23069619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23075490 23075610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23078144 23078216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23080339 23080453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23087485 23087619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23089591 23089788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23090476 23090582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23094289 23094517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23099565 23099764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23110245 23110286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23110654 23110763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23112505 23112517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGCTCTTCCTCGCGTTTCATGCAGGCTCTTGGGGAAGCTGGTGCTGCTGCTGCTGTGTGATTACCGCGG
ACAGACCTTGGGACCGAGGCCGGCGCTGGCAGCTGGAGATGGCGGACACACCGTCAGTGTATGAAACCAG
ATTTGAGGCGGCCGTGAAGGTGATCCAGAGTTTGCCGAAAAATGGATCATTCCAACCAACAAATGAAATG
ATGCTTAAGTTCTATAGCTTCTACAAACAGGCAACTGAAGGACCCTGTAAACTTTCACGGCCTGGATTCT
GGGATCCTATTGGAAGATATAAATGGGATGCTTGGAGTTCACTGGGTGATATGACTAAAGAAGAAGCCAT
GATTGCATATGTTGAAGAAATGAAAAAGATTATTGAAACCATGCCCATGACTGAGAAAGTGGAAGAGTTG
CTGCATGTTATAGGTCCATTTTACGAGATTGTAGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGACCT
CAGATCTTGGTAATGTTCTGACCTCTTCAAATGCCAAAGCTGTTAATGGTAAAGCAGAGAGCAGTGATAG
TGGGGCTGAGTCTGAAGAAGAAGAGGCCCAAGAAGAGTTAAAAGGAGCAGAACAGAGCGGCAGTGATGAT
AAGAAAACGCTGAAGAAATCAGCAGATAAGAATTTGGAAATCATTGTTACCAATGGCTATAAAGGTAGCT
TTGTTCAGGATATACAGAGTGACATTCATACTGATTCTTCCCGGAGCACCAGAAGCAGTGAAGATGAAAA
GCCTGGAGATGAGAGCTCTCAGCAGACAGGACACACCATTGTCTGTGCTCACCAAGATAGAAATGAAGAT
CCCAGTGAAGATGCTTCAGGAATACACCATTTAACAAGTGATTCAGATAGTGAAGTGTACTGTGACTCTA
TGGAGCAATTTGGACAAGAAGAGTATTATTTAGGTGGTGATCCTACTCAGCACTTGGAAAGTTCTGGTTT
TTGTGAAGATGCTCAGCAATCTCCTGGAAATGGCAGCATTGGGAAAATGTGGATGGTAGCAGTCAAAGGA
AAAGGCGAAGTGAAACACGGAGGAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACCGTGAGACGAGAG
GTGGAGAGAGCGAGGACTTCTCCAGTGTCAGGAGAGGGAGAGGGAATAGAATACCACATTTGAGCGAAGG
ACCCAAGGGTCGGCAAGTAGGAAGTGGAGGTGATGGAGAACGCTGGGGCTCAGACCGGGGGTCCAGAGGC
AGCCTCAATGAGCAGATCGCTCTTGTGCTCATTAGATTGCAGGAGGACATGCAGAATGTCCTTCAGAGAC
TTCATAAACTGGAAACACTAACTGCTTCGCAGGCGAAATTATCTTTGCAGACAAGTAATCAGCCCTCCTC
ACAGAGACCAGCTTGGTGGCCCTTTGAGATGTCCCCTGGTGCATTAGCTTTTGCTATTATATGGCCTTTT
ATTGCTCAGTGGTTGGCACATTTGTATTATCAAAGAAGGAGAAGAAAACTAAATTGA

Translation (508 aa):
MLFLAFHAGSWGSWCCCCCVITADRPWDRGRRWQLEMADTPSVYETRFEAAVKVIQSLPKNGSFQPTNEM
MLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKIIETMPMTEKVEEL
LHVIGPFYEIVEDKKSSKSSDLTSDLGNVLTSSNAKAVNGKAESSDSGAESEEEEAQEELKGAEQSGSDD
KKTLKKSADKNLEIIVTNGYKGSFVQDIQSDIHTDSSRSTRSSEDEKPGDESSQQTGHTIVCAHQDRNED
PSEDASGIHHLTSDSDSEVYCDSMEQFGQEEYYLGGDPTQHLESSGFCEDAQQSPGNGSIGKMWMVAVKG
KGEVKHGGEDGRSSSGAPHRETRGGESEDFSSVRRGRGNRIPHLSEGPKGRQVGSGGDGERWGSDRGSRG
SLNEQIALVLIRLQEDMQNVLQRLHKLETLTASQAKLSLQTSNQPSSQRPAWWPFEMSPGALAFAIIWPF
IAQWLAHLYYQRRRRKLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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